View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6533_low_36 (Length: 350)
Name: NF6533_low_36
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_36 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 41806999 - 41807344
Alignment:
| Q |
1 |
aatgaggtaaagtaaaattatattgttaagtcatctagctcaaaaatgtgattgagatttacaaagcttaagtcattttttagtaaaactcattgttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41806999 |
aatgaggtaaagtaaaattatattgttaagtcatctagctcaaaaatgtgattgagatttacaaagcttaagccattttttagtaaaactcattgttcaa |
41807098 |
T |
|
| Q |
101 |
tctgttcagctatgaaaatgaataacagttgcatagaaagcttagctgttcctttactgacacannnnnnnn-cttcatttccttgtatatcttataaaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41807099 |
tctgttcagctatgaaaatgaataacagttgcatagaaagattagctgttcctttactgacacatttttttttcttcatttccttgtatatcttataaaa |
41807198 |
T |
|
| Q |
200 |
atacagctgaccttgtttgatatcccataatattaaaaagaaaaaccatttatcttaagggcccaaagtgaaagatatttacagcttaattagaatagac |
299 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41807199 |
atacagctgactttgtttgatatcccataatattaaaaagaaaaaccatttatcttaagggcccaaagtgaaagatatttacagcttaattagaatagac |
41807298 |
T |
|
| Q |
300 |
gtaatggaaataatttgaacacaacttaaa-agatagaataattta |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
41807299 |
gtaatggaaataatttgaacacaacttaaagagatagcataattta |
41807344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 174 - 329
Target Start/End: Complemental strand, 42031501 - 42031353
Alignment:
| Q |
174 |
ttcatttccttgtatatcttataaaaatacagctgaccttgtttgatatcccataatattaaaaagaaaaaccatttatcttaagggcccaaagtgaaag |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| | ||||| ||| ||||||| || |||||||||||| |
|
|
| T |
42031501 |
ttcatttccttgtatatcttataaaaatacaactgaccttgttagatatcccataatattta----aaaaatcatctatctta--gggccaaagtgaaag |
42031408 |
T |
|
| Q |
274 |
atatttacagcttaattagaatagacgtaatggaaataatttgaacacaacttaaa |
329 |
Q |
| |
|
| ||| || ||| ||| || |||||||||||||||| ||||||||||||||| |
|
|
| T |
42031407 |
agttttttagtttacttacaactgacgtaatggaaataa-gtgaacacaacttaaa |
42031353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 42031616 - 42031569
Alignment:
| Q |
93 |
ttgttcaatctgttcagctatgaaaatgaataacagttgcatagaaag |
140 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
42031616 |
ttgttcaatatgttcagctatgaaactgaataacagttgaatagaaag |
42031569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 42032431 - 42032394
Alignment:
| Q |
28 |
aagtcatctagctcaaaaatgtgattgagatttacaaa |
65 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
42032431 |
aagtcatccagctcaaaaatgtgattaagatttacaaa |
42032394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University