View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_low_37 (Length: 347)
Name: NF6533_low_37
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 161 - 334
Target Start/End: Original strand, 1047898 - 1048071
Alignment:
| Q |
161 |
aatgggacacattggttctctgccaaaatgttaacaatgagttgagagataatcaacaaatatcatttctgaaagagaaatatcttggtagtaacactcc |
260 |
Q |
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| T |
1047898 |
aatgggacacattggttctcttccaaaatgttaacaatgagttgggagataatcaacaaatatcatttctgaaagagaaatatcttggtagtaacactct |
1047997 |
T |
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| Q |
261 |
gaagtaatcatccccagccttattcaatctattcgaagtttgataccattatcgacaaataacatctctttctg |
334 |
Q |
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| T |
1047998 |
gaagtaatcattcccagccttattcaatctattctaagtttgataccattatcgacaaataacatctctttctg |
1048071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 116 - 276
Target Start/End: Complemental strand, 1022768 - 1022609
Alignment:
| Q |
116 |
aattttgtcagagggatgtcctagaagcataaagttttggtgagtaatgggacacattggttctctgccaaaatgttaacaatgagttgagagataatca |
215 |
Q |
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| T |
1022768 |
aattttgtcagagggatgtcctagaagcagaaaattttgatgcgtaatgggacacattggttctctgccaaa-tgttaacaatgagttgagagataatca |
1022670 |
T |
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| Q |
216 |
acaaatatcatttctgaaagagaaatatcttggtagtaacactccgaagtaatcatcccca |
276 |
Q |
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| T |
1022669 |
acaaatatcatttttgaaagagaaatgtctaggtagtaacactctgaagtaatcattccca |
1022609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 1047775 - 1047868
Alignment:
| Q |
20 |
gaaagacagagttactgaatattaactaggttagttagaaattagaataatatgtgtaaggtcagatgaaaacggaataaaatttgttatgtat |
113 |
Q |
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| T |
1047775 |
gaaagacagagttactgaatattaactaggttagttagaaattagaataatatgtgtaaggtcagatgaaaacggaataaaatttgttatgtat |
1047868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 1022819 - 1022780
Alignment:
| Q |
38 |
atattaactaggttagttagaaattagaataatatgtgta |
77 |
Q |
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| T |
1022819 |
atatcaactaggttagttagaaattagaatagtatgtgta |
1022780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 40637567 - 40637659
Alignment:
| Q |
164 |
gggacacattggttctctgccaaaatgttaacaatgagttgagagataatcaacaaatatcatttctgaaagagaaatatcttggtagtaacactc |
259 |
Q |
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| T |
40637567 |
gggacacattggttctctgccaaa-tgttaacaatgagttgaga--taatcaacaaatatcatttttgaaagagaaatgtctaggtagtaacactc |
40637659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 40636607 - 40636658
Alignment:
| Q |
19 |
agaaagacagagttactgaatattaactaggttagttagaaattagaataat |
70 |
Q |
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| T |
40636607 |
agaaaggcagagttgcggaagattaactagtttagttagaaattagaataat |
40636658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 40636820 - 40636867
Alignment:
| Q |
121 |
tgtcagagggatgtcctagaagcataaagttttggtgagtaatgggac |
168 |
Q |
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| T |
40636820 |
tgtcagagcgatgtcctagaaccagaaaattttggtgagtaatgggac |
40636867 |
T |
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