View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_low_39 (Length: 344)
Name: NF6533_low_39
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 31851794 - 31851956
Alignment:
| Q |
18 |
aattttgcatgattggccgtggtggattggaaacaacgcatcacatgttcctttctccgtttttgctcctttgtggagcattgtttggtcttggattgat |
117 |
Q |
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| T |
31851794 |
aattttgcgtgattggccgcggtggattggacacaacgcatcacatgttcctttctccgtttttgctcctttgtggagcatggttaggtcttgggttgat |
31851893 |
T |
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| Q |
118 |
atttcatcagctgatctggatttcttacaggatcattttattcagtttgtttagtctttcggt |
180 |
Q |
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| T |
31851894 |
atttcatcagctgatccggatttcttacaggatcatcttgttcagtttgtttagtctttcggt |
31851956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 31853379 - 31853451
Alignment:
| Q |
195 |
tcaaaataattactacttgagcaagggttcaaatcaaagaaagaaaaagttgcaccatttaaaacacacttaa |
267 |
Q |
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| T |
31853379 |
tcaaaataattactacttgagcaagggttcaaatcaaagaaagaaaaagttgcaccatttaaaacacaattaa |
31853451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 31851362 - 31851404
Alignment:
| Q |
226 |
aatcaaagaaa-gaaaaagttgcaccatttaaaacacacttaa |
267 |
Q |
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| T |
31851362 |
aatcaaagaaaagaaaaagttgcaccatataaaacacacttaa |
31851404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 38 - 165
Target Start/End: Complemental strand, 18187105 - 18186974
Alignment:
| Q |
38 |
ggtggattggaaacaacgcatcacatgttcctttct----ccgtttttgctcctttgtggagcattgtttggtcttggattgatatttcatcagctgatc |
133 |
Q |
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| T |
18187105 |
ggtggattggaaacaacgcatcacttgttcctttctttccccgttttcgcccctttgtggagcatagttaggtcttggattggtatatcttcagctaatc |
18187006 |
T |
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| Q |
134 |
tggatttcttacaggatcattttattcagttt |
165 |
Q |
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| T |
18187005 |
cgtattccttacaggatcatcttgttcagttt |
18186974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 165
Target Start/End: Complemental strand, 15143292 - 15143161
Alignment:
| Q |
38 |
ggtggattggaaacaacgcatcacatgttcctttct----ccgtttttgctcctttgtggagcattgtttggtcttggattgatatttcatcagctgatc |
133 |
Q |
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| T |
15143292 |
ggtggagtggaaacaacacatcacttgttcctttcttgccccgctttcgcccctttgtggagcatggatagatcttggattggtatattattagctgatc |
15143193 |
T |
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| Q |
134 |
tggatttcttacaggatcattttattcagttt |
165 |
Q |
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| T |
15143192 |
cagattccttacaggatcatcttgttcagttt |
15143161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 24838292 - 24838381
Alignment:
| Q |
76 |
gtttttgctcctttgtggagcattgtttggtcttggattgatatttcatcagctgatctggatttcttacaggatcattttattcagttt |
165 |
Q |
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| T |
24838292 |
gttttcgcccctttttggtgcatggttaggtcgtggattggtatatcttcagctgatctggatttgttacaggatcatcttgttcagttt |
24838381 |
T |
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