View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6533_low_4 (Length: 759)
Name: NF6533_low_4
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 711; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 711; E-Value: 0
Query Start/End: Original strand, 11 - 741
Target Start/End: Complemental strand, 40768147 - 40767417
Alignment:
| Q |
11 |
tcgaagaatatctgcatcgctgctagacggtctgaagaaggaggttccttgcatttcaaagctctataaatactttttccggattcagcgaggcgagcgg |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40768147 |
tcgaacaatatctgcatcgctgctagacggtccgaagaaggaggttccttgcatttcaaagctctataaatactttttccggattcagcgaggcgagcgg |
40768048 |
T |
|
| Q |
111 |
cgagtccctccaccatataggctgcaattctttgggaaggctctccttgaattgagacaattcgtcggagattgtttatcattgacgatgcttcctcttc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40768047 |
cgagtccctccaccatataggctgcaattctttgggaaggctctccttgaattgagacaattcgtcggagattgtttatcattgacgatgcttcctcttc |
40767948 |
T |
|
| Q |
211 |
atttccttctgaaattgcagtagcacattcataaagaagttgcttgggggtcctagaaatttttgttatttctttggtggtgctactgatgctgctaata |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40767947 |
atttccttctgaaattgcagtagcacattcataaagaagttgcttgggggtcctagaaatttttgttatttctttggtggtgctactgatgctgctaata |
40767848 |
T |
|
| Q |
311 |
ttggaatctggagacgaatactcctttggtgagtcatggtcatggaacagcagcatattctgaattggatcaggatcagcccaatcaataatgttaggat |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40767847 |
ttggaatctggagacgaatactcctttggtgagtcatggtcatggaacagcagcatattctgaattggatcaggatcagcccaatcaataatgttaggat |
40767748 |
T |
|
| Q |
411 |
caatttccatggtttgagaattaccatattcctcttcttcctcaatgtcactatcatcaagtaatgccctctccaatgcttctagttttgatctcattac |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40767747 |
caatttccatggtttgagaattaccatattcctcttcttcctcaatgtcactatcatcaagcaatgccctctccaatgcttctagttttgatctcattac |
40767648 |
T |
|
| Q |
511 |
accatcaacttcaattgaatccatgcttcgattttccattatcaaatctgatccaaaactggactggtcagcaccacgttgcctttttggcatgaaactt |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
40767647 |
accatcaacttcaattgaatccatgcttcgattttccattatcaaatctgatccaaaactggactgatcagcaccacgttgccttgttggcatgaaactt |
40767548 |
T |
|
| Q |
611 |
gtagagacgttggaactagatggttctatcagttcttctgtattcgagtcatggaaatacttctcgtaactctcgctcgagtaagcatctgtcatataca |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40767547 |
gtagagacgttggaactagatggttctatcagttcttctgtattcgagtcatggaaatacttctcgtaactctcgctcgagtaagcatctgtcatataca |
40767448 |
T |
|
| Q |
711 |
tgcttctatgcttatcagaataagtaatttg |
741 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
40767447 |
tgcttctatgcttatcagaataagtaatttg |
40767417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 10093639 - 10093940
Alignment:
| Q |
19 |
tatctgcatcgctgctagacggtctgaagaaggaggttccttgcatttcaaagctctataaatactttttccggattcagcgaggcgagcggcgagtccc |
118 |
Q |
| |
|
||||||||| ||||||||||| || ||||| |||||||||||||||||||||||| ||||||||| |||||| ||| ||| | ||||| || ||||| |
|
|
| T |
10093639 |
tatctgcattgctgctagacgatcagaagacggaggttccttgcatttcaaagctttataaatacattttcccgatgaagccaaacgagcagcaagtcct |
10093738 |
T |
|
| Q |
119 |
tccaccatataggctgcaattctttgggaaggctctccttgaattgagacaattcgtcggagattgtttatcattgacgatgcttcctcttcatttcctt |
218 |
Q |
| |
|
|||||||| |||||||||||||| | ||||| ||||| |||||||| || | | | ||||| | ||||| | || |||| |||||||||||| |
|
|
| T |
10093739 |
tccaccatgtaggctgcaattctatccgaaggttctccctgaattgaaaccaactgcctgagatcatcgatcatagctgaggcttttacttcatttcctt |
10093838 |
T |
|
| Q |
219 |
ctgaaattgcagtagcacattcataaagaagttgcttgggggtccta-gaaatttttgt--tatttctttggtggtgctactgatgctgctaatattgga |
315 |
Q |
| |
|
|||||| ||| ||||||||||||| || | |||||| ||||||| | |||| |||||| |||||||| ||||||||||| |||| |||| ||| || |
|
|
| T |
10093839 |
ctgaaagtgcgctagcacattcatatagtaattgcttcggggtccgaggaaagttttgtgatatttctt---tggtgctactggtgctactaagatttga |
10093935 |
T |
|
| Q |
316 |
atctg |
320 |
Q |
| |
|
||||| |
|
|
| T |
10093936 |
atctg |
10093940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 623 - 728
Target Start/End: Original strand, 10094324 - 10094429
Alignment:
| Q |
623 |
gaactagatggttctatcagttcttctgtattcgagtcatggaaatacttctcgtaactctcgctcgagtaagcatctgtcatatacatgcttctatgct |
722 |
Q |
| |
|
|||||||| |||||||||||||| |||||| || ||| |||| ||||| ||||||||||| |||||||||| ||| |||| |||||||||||||||| |
|
|
| T |
10094324 |
gaactagacggttctatcagttcctctgtaggtgaatcaaggaagtacttttcgtaactctcactcgagtaagaatcattcatgtacatgcttctatgct |
10094423 |
T |
|
| Q |
723 |
tatcag |
728 |
Q |
| |
|
|||||| |
|
|
| T |
10094424 |
tatcag |
10094429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University