View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6533_low_42 (Length: 336)

Name: NF6533_low_42
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6533_low_42
NF6533_low_42
[»] chr1 (1 HSPs)
chr1 (18-315)||(6003778-6004074)


Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 6004074 - 6003778
Alignment:
Q  18 agttagctctcttatattttaagtgatattatgctaatattaactaatgaaacgacctaataaggnnnnnnnntacaaaccaatatatacccttgctatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||| |||||    
T  6004074 agttagctctcttatattttaagtgatattatgctaatattaactaatgaaacgacctaataagaaaaaaaaatacaaaccaatatatacccttactatc 6003975  T
Q  118 taagggtgtatataaagnnnnnnngtgattaactgtattttgactgttttacacaatcaaaatttaatagaaaacagtgtttaaaagattaaattttaga 217  Q
    |||||||||||||||||       ||||||||||||||||||||| ||||| |||||||||||||||  ||||| | |||||||||||||||| ||||||    
T  6003974 taagggtgtatataaagaaaaaa-gtgattaactgtattttgacttttttaaacaatcaaaatttaaaggaaaataatgtttaaaagattaaactttaga 6003876  T
Q  218 gtgaaaatctcacgtagatagtttggttaatgagttaaacaatactgaatgatatttagtaaaatccaaaattcgatctttggaaactatcattccca 315  Q
    || ||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  6003875 gtaaaaatctcacgtagataatttggttaatgagttaaacaacattgaatgatatttagtaaaattcaagatttgatctttggaaactatcattccca 6003778  T

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