View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6533_low_45 (Length: 314)

Name: NF6533_low_45
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6533_low_45
NF6533_low_45
[»] chr8 (1 HSPs)
chr8 (4-298)||(40542919-40543213)


Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 4 - 298
Target Start/End: Complemental strand, 40543213 - 40542919
Alignment:
Q  4 aaaattcttgatcatcaatacctttgtttggaataaaactacgttgacaagaccaataagattcttcaaatggggtctaattcttcaaaccataaccttt 103  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40543213 aaaattcttgatcatcaataccattgtttggaataaaactacgttgacaagaccaataagattcttcaaatggggtctaattcttcaaaccataaccttt 40543114  T
Q  104 gagataagcttgagaagaatgttataaaggataatcgtcctaaaggccatcaaactttgaggtttattactcttaggaattggaacaataagagtctatg 203  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40543113 gagataagcttgagaagaatgttataaaggatagtcgtcctaaaggccatcaaactttgaggtttattactcttaggaattggaacaataagagtctatg 40543014  T
Q  204 tcaacttaggagggataataccaatattaaaacactccaaaacaagctttcaaacaatataactccctacgatctacatatatataagaagtaaa 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40543013 tcaacttaggagggataataccaatattaaaacactccaaaacaagctttcaaacaatataactccctacgatctacatatatataagaagtaaa 40542919  T

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