View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6533_low_48 (Length: 299)
Name: NF6533_low_48
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_48 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 16087558 - 16087756
Alignment:
| Q |
1 |
agaactgaagaaggtaaacaatctatggtaacaatgtgtggtatacaatccagagttttctctatctaaatcctatcatgatcaagtaaaacaaatttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16087558 |
agaactgaagaaggtaaacaatctatggtaacaatgtgtggtatacaatccagagttttctctatctaaatcctatcatgatcaagtaaaacaaatttag |
16087657 |
T |
|
| Q |
101 |
cttattagaaatgattaacttggtttgcatttctacaaacaatggcaactaaaagaagaaaaaatgtggaggaatgacatgtaaatcgtcaacaaattg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| || ||||||||||||| |||||| |
|
|
| T |
16087658 |
cttattagaaatgattaacttggtttgcatttctacaaacaatggaaactaaaagaagaaaaaatgtgaaggaatcacttgtaaatcgtcaataaattg |
16087756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 175
Target Start/End: Original strand, 7782159 - 7782326
Alignment:
| Q |
6 |
tgaagaaggtaaacaatctatggtaacaatgtgtggtatacaatccagagttttctctatctaaatcctatcatgatcaagtaaaacaaatttagcttat |
105 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |||| |||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
7782159 |
tgaagaaggtaaacaatttatggcaacaatttgtgtaatacaatccatagttttctctatctaaatcctatcattatcaagcaaaacaaatttagc---g |
7782255 |
T |
|
| Q |
106 |
tagaaatgattaacttggtttgcatttctacaaacaatggcaactaaaagaag-aaaaaatgtggaggaat |
175 |
Q |
| |
|
|||||||| ||||||| ||| |||||||| ||| || ||||||| | |||| ||||||||||||||||| |
|
|
| T |
7782256 |
aagaaatgagtaacttgatttcaatttctaccaacgatagcaactataggaagaaaaaaatgtggaggaat |
7782326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University