View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_low_49 (Length: 298)
Name: NF6533_low_49
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_49 |
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| [»] chr2 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 298
Target Start/End: Original strand, 1615605 - 1615886
Alignment:
| Q |
17 |
atgttggtggtgttaaatttgtttaaaatagaaaactaaactgttagaagaaccaaaaagcaagataattcaatacaaacaaccaacataaatataattt |
116 |
Q |
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| T |
1615605 |
atgttggtggtgttaaatttgtttaaaatagaaaactaaactgttagaagaaccaaaaagcaagataattcaatacaaacaaccaacataaatataattt |
1615704 |
T |
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| Q |
117 |
aaaaataatttttctgaactatagaacttgcagaccagagcaattagtagaataaaagccgctaagctgcaactggattaagtggagacgaatcaaaacc |
216 |
Q |
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| T |
1615705 |
aaaaataatttttctgaactatagaacttgcagaccagagcaaatagtagaataaaagccgctaagctgcaactggattaagtggagacgaatcaaaacc |
1615804 |
T |
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| Q |
217 |
caagaaaaaaccatttaggtgtatatttacactataagctatattggaatttggtgtataggaaatatacatcaaatttgaa |
298 |
Q |
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| T |
1615805 |
caagaaaaaaccatttaggtgtatatttacactataagctatattggaatttggtgtataggaaatatacatcaaatttgaa |
1615886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 24455089 - 24455046
Alignment:
| Q |
17 |
atgttggtggtgttaaatttgtttaaaatagaaaactaaactgt |
60 |
Q |
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| T |
24455089 |
atgttggtggtgttaaatttgtttaaaatagaaaactaaactgt |
24455046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 24454720 - 24454665
Alignment:
| Q |
243 |
ttacactataagctatattggaatttggtgtataggaaatatacatcaaatttgaa |
298 |
Q |
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| T |
24454720 |
ttacactataagctatatgggaattcggtgcataggaaaaagacatcaaatttgaa |
24454665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 27541475 - 27541530
Alignment:
| Q |
243 |
ttacactataagctatattggaatttggtgtataggaaatatacatcaaatttgaa |
298 |
Q |
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| T |
27541475 |
ttacactataagctatatgggaatttggtgcataggaaatatacatcaaatttgaa |
27541530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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