View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6533_low_51 (Length: 288)
Name: NF6533_low_51
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_51 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 44839638 - 44839914
Alignment:
| Q |
12 |
tcatcaagaagtacagcaagctccctgtgaaccttcaccctctttgaaccctttgtcttagcatgattcatcaggggcagcaggccactgtaccaatcaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44839638 |
tcatcaagaagtacagcaagctccctgtgaaccttcaccctctttgaaccctttgtcttagcatgattcatcaggggcagcaggccactgtaccaatcaa |
44839737 |
T |
|
| Q |
112 |
tagaaccaggaccactttgacaagctggacaatgccactctctttccggttcatttatctgttcaatagtcatgttatccaaatactcaaagaattttct |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44839738 |
tagaaccaggaccactttgacaagctggacaatgccactctctttccggttcatttatctgttcaatagtcattttatccaaatactcaaagaattttct |
44839837 |
T |
|
| Q |
212 |
gaaccatttgcttttctttcgtgtctcatggctcttttgactcacatccgaatcatattcatcactcattagatcat |
288 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44839838 |
gaaccatttgctcttctttcgtgtctcatggctcttttgactcgcatccgaatcatattcatcactcattagatcat |
44839914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 44851395 - 44851671
Alignment:
| Q |
12 |
tcatcaagaagtacagcaagctccctgtgaaccttcaccctctttgaaccctttgtcttagcatgattcatcaggggcagcaggccactgtaccaatcaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || ||||||||||||| |
|
|
| T |
44851395 |
tcatcaagaagtacagcaagctccctgtgaaccttcaccctttttgaaccctttgtcttagcatgattcatcaggggctgcagacctctgtaccaatcaa |
44851494 |
T |
|
| Q |
112 |
tagaaccaggaccactttgacaagctggacaatgccactctctttccggttcatttatctgttcaatagtcatgttatccaaatactcaaagaattttct |
211 |
Q |
| |
|
||| ||||||||||| ||||||||||||||| ||||||| ||| || |||||||||||||| |||||||||| ||||||||||| || |||||| ||| | |
|
|
| T |
44851495 |
tagcaccaggaccaccttgacaagctggacagtgccactgtctctctggttcatttatctgatcaatagtcaggttatccaaattctgaaagaacttttt |
44851594 |
T |
|
| Q |
212 |
gaaccatttgcttttctttcgtgtctcatggctcttttgactcacatccgaatcatattcatcactcattagatcat |
288 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44851595 |
gaaccatttgctcttcttccgtgtctcatggctcttttgactcgcatccgaatcatattcatcactcattagatcat |
44851671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University