View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_low_52 (Length: 285)
Name: NF6533_low_52
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_52 |
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Alignment Details
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 21263062 - 21263009
Alignment:
| Q |
22 |
aagcctaaaatggattggattttaatacaaaagtagaatacatgtgatatgtgc |
75 |
Q |
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| T |
21263062 |
aagcctaaaatggattggatttcaatacaaaagtagaatacatgtgatatgtgc |
21263009 |
T |
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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 33700643 - 33700568
Alignment:
| Q |
180 |
ctagtttccaccaaaaatctatgctatcacctaaaatattaatatagtttgaaaaagacctgaccataaaatttag |
255 |
Q |
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| T |
33700643 |
ctagttttaacctaaaatctctgctatcacataaggtagtaatataatttgcaaaagacctgaccgtaaaatttag |
33700568 |
T |
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