View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_low_54 (Length: 273)
Name: NF6533_low_54
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_54 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 12476174 - 12476429
Alignment:
| Q |
17 |
taacatcagtgtcttcaaacatcggcaaccacttgcagttttctccaaggatttttggatgtactctaatgagttggtatctgttagggaacataaaagt |
116 |
Q |
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| T |
12476174 |
taacatccgtgtcttcaaacatcggcaaccacttgcagttttctccaaggatatttggatgtactctaatgagttggtatctgttagggaacataaa-gt |
12476272 |
T |
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| Q |
117 |
agggttagggtaagaaagcttttagaatagaaaacccgactctaaaaaactagataaataaacgcatacaaaagtacaagcgattaatcatggagtacgg |
216 |
Q |
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| T |
12476273 |
agggttagggtaagaaagcttttagaacagaaaacccgactctaaaaaactagataaataaacgcatacaaaagtacaagcgattaatcatggagtacgg |
12476372 |
T |
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| Q |
217 |
ctaattgtgtgtgcctaacctatagtagcatagtgcgttgggaaggtcccttgagta |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12476373 |
ctaattgtgtgtgcctaacctatagtagcatagtgcgttgggaaggtccctcgagta |
12476429 |
T |
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