View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_low_56 (Length: 269)
Name: NF6533_low_56
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_56 |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 1616598 - 1616337
Alignment:
| Q |
7 |
aagaatattatttgacaaaaatgttgacaaacgcttgttttacgttactcatattagnnnnnnnngagaggtacttatacttaatttgttgtattttata |
106 |
Q |
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| T |
1616598 |
aagaatattatttgacaaaaatgttgacaaacgcttgttttacgttactcatattagttttttt-gagaggtacttatactta-----ttgtattttata |
1616505 |
T |
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| Q |
107 |
agtattttgaggccaaatcttaaaaat--atgtattaagttccctnnnnnnnnnnnt---tatgcatcaagtaaagtttggtgcattaattcttatcaat |
201 |
Q |
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| T |
1616504 |
agtattttgaggccaaatcttaaaaatttatgtattaagttccctaaaaaataaaataattatgcatcaagtaaagtttggtgcattaattcttatcaat |
1616405 |
T |
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| Q |
202 |
caaatcccttgtataaggggagatttctaaaattcggcacttctttctttttctgaaaaggaattttt |
269 |
Q |
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| T |
1616404 |
caaatcccttgtataaggggagatttctaaaattcggcacttctttctttttctgaaaaggaattttt |
1616337 |
T |
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Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 170 - 269
Target Start/End: Original strand, 40050472 - 40050571
Alignment:
| Q |
170 |
aagtaaagtttggtgcattaattcttatcaatcaaatcccttgtataaggggagatttctaaaattcggcacttctttctttttctgaaaaggaattttt |
269 |
Q |
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| T |
40050472 |
aagtaaattttgatgcattgattcttctcaatcaaatcccttgtataacgggagatttctaaaattcggtttttatttctttttctgaaaaggaattttt |
40050571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 40050421 - 40050475
Alignment:
| Q |
92 |
ttgttgtattttataagtattttgaggccaaatcttaaaaa--tatgtattaagt |
144 |
Q |
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| T |
40050421 |
ttgttgtattttataagtattttgagaccaaatcttaaaaatctatgtattaagt |
40050475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 40050335 - 40050392
Alignment:
| Q |
7 |
aagaatattatttgacaaaaatgttgacaaacgcttg---ttttacgttactcatatt |
61 |
Q |
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| T |
40050335 |
aagaattttatttgacaaaaatgttgacaaaggcttgtacttttacgttattcatatt |
40050392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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