View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6533_low_58 (Length: 267)
Name: NF6533_low_58
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_58 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 2840428 - 2840680
Alignment:
| Q |
9 |
caattatatttttggaaaggctttctggcaacattatgtctgttcatatttacatgtatattggaatatataaacgaaattatttgttagacatgctaaa |
108 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2840428 |
caattatatttttgaaaaggctttctggcaacattatgtctgttcatatttacatgtatattggaatatataaacgaaattatttgttagacatgctaaa |
2840527 |
T |
|
| Q |
109 |
gggagcactagtctgaccactaaattaaatctaattgtacatattcacttgcatta----nnnnnnnnnnnnnnnaaacgacattcactcacattaattt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2840528 |
gggagcactagtctgaccactaaattaaatctaattgtacatattcacttgcattatttttttttccttttttttaaacgacattcactcacattaattt |
2840627 |
T |
|
| Q |
205 |
agaggattcatattaattnnnnnnnnnnttggataggtttaaaggatattcat |
257 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2840628 |
agaggattcatattaataatttttttttttggataggtttaaaggatattcat |
2840680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University