View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_low_60 (Length: 259)
Name: NF6533_low_60
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 126 - 238
Target Start/End: Complemental strand, 35756509 - 35756397
Alignment:
| Q |
126 |
aatccaaatccggataaattattcatgcatttctgttttaatcgttacacagctccaactacctaccttattccgttcccggcatgcaaaaccaccgtaa |
225 |
Q |
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| T |
35756509 |
aatccaaatccggataaattattcatgcatttctgttttaatcgttacacagctccaactacctaccttattccgttcccggcatgcaaaaccaccgtaa |
35756410 |
T |
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| Q |
226 |
ctgccaccgtcgc |
238 |
Q |
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||||||||||||| |
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| T |
35756409 |
ctgccaccgtcgc |
35756397 |
T |
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Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 35756633 - 35756557
Alignment:
| Q |
1 |
cctctttttccaatcccatcaacttcatcagaacttacaagaataccgtgagaaaaataaaatgataaatctaacaa |
77 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35756633 |
cctctttttacaatcccatcaacttcatcagaacttacaagaataccgtgaaaaaaataaaatgataaatctaacaa |
35756557 |
T |
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