View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6533_low_63 (Length: 252)

Name: NF6533_low_63
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6533_low_63
NF6533_low_63
[»] chr6 (2 HSPs)
chr6 (10-252)||(520961-521203)
chr6 (206-252)||(20969821-20969867)
[»] chr8 (3 HSPs)
chr8 (208-250)||(6148491-6148533)
chr8 (208-252)||(8845553-8845597)
chr8 (206-250)||(25141042-25141086)
[»] chr3 (2 HSPs)
chr3 (210-252)||(29078963-29079005)
chr3 (210-252)||(10046252-10046294)
[»] chr1 (3 HSPs)
chr1 (207-249)||(39923242-39923284)
chr1 (208-252)||(25389771-25389815)
chr1 (212-252)||(48379474-48379514)
[»] chr7 (1 HSPs)
chr7 (208-252)||(12287076-12287120)
[»] chr4 (4 HSPs)
chr4 (208-252)||(16529826-16529870)
chr4 (208-252)||(56192210-56192254)
chr4 (210-244)||(13205738-13205772)
chr4 (206-252)||(29845170-29845216)
[»] scaffold1940 (1 HSPs)
scaffold1940 (210-252)||(547-589)
[»] scaffold0281 (1 HSPs)
scaffold0281 (210-252)||(22294-22336)
[»] chr5 (2 HSPs)
chr5 (210-252)||(9622435-9622477)
chr5 (206-252)||(43100999-43101044)
[»] chr2 (2 HSPs)
chr2 (210-252)||(9032761-9032803)
chr2 (208-252)||(9548460-9548504)
[»] scaffold0001 (1 HSPs)
scaffold0001 (210-250)||(428283-428323)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 520961 - 521203
Alignment:
Q  10 aagaatatgaagtgttaaatgagtgtgtgaattaatggatatatcgctgagtaaattcaatctatttatgctataaatatatgannnnnnnnaaagggta 109  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |        ||||||||    
T  520961 aagaatatgaagtgttaaatgagtgggtgaattaatggatatatcgctgagtaaattcaatctatttatgctataaatatataattttttttaaagggta 521060  T
Q  110 aatatttatgagtaaagatatttcttaatcaaaagaaatttcttaattaattgtatttatagctcataataaatattacatgattaaaaatgagtgtatt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  521061 aatatttatgagtaaagatatttcttaatcaaaagaaatttcttaattaattgtatttatagctcataataaatattacatgattaaaaatgagtgtatt 521160  T
Q  210 agaccatccacaatggtgcgtgcttaacctatttaacaccaca 252  Q
    ||||||||||||||||||| ||||||||||||||| |||||||    
T  521161 agaccatccacaatggtgcatgcttaacctatttagcaccaca 521203  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 20969867 - 20969821
Alignment:
Q  206 tattagaccatccacaatggtgcgtgcttaacctatttaacaccaca 252  Q
    |||||||||||||||||||||| || ||| ||||||||| |||||||    
T  20969867 tattagaccatccacaatggtgggtacttcacctatttagcaccaca 20969821  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 6148533 - 6148491
Alignment:
Q  208 ttagaccatccacaatggtgcgtgcttaacctatttaacacca 250  Q
    |||||||||||||||||||| |||||| |||||||||||||||    
T  6148533 ttagaccatccacaatggtgggtgcttcacctatttaacacca 6148491  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 8845553 - 8845597
Alignment:
Q  208 ttagaccatccacaatggtgcgtgcttaacctatttaacaccaca 252  Q
    |||||||||||||||||||| |||||| ||||||||| |||||||    
T  8845553 ttagaccatccacaatggtgggtgctttacctatttagcaccaca 8845597  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 25141086 - 25141042
Alignment:
Q  206 tattagaccatccacaatggtgcgtgcttaacctatttaacacca 250  Q
    ||||||||||||||||||||||  ||||| | |||||||||||||    
T  25141086 tattagaccatccacaatggtggatgcttcatctatttaacacca 25141042  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 29079005 - 29078963
Alignment:
Q  210 agaccatccacaatggtgcgtgcttaacctatttaacaccaca 252  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  29079005 agaccatccacaatgatgagtgcttaacctatttaacaccaca 29078963  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 10046252 - 10046294
Alignment:
Q  210 agaccatccacaatggtgcgtgcttaacctatttaacaccaca 252  Q
    |||||||||||||||||| |||||| | |||||||||||||||    
T  10046252 agaccatccacaatggtgagtgcttcaactatttaacaccaca 10046294  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 39923242 - 39923284
Alignment:
Q  207 attagaccatccacaatggtgcgtgcttaacctatttaacacc 249  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  39923242 attagaccatccacaatgatgggtgcttaacctatttaacacc 39923284  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 25389815 - 25389771
Alignment:
Q  208 ttagaccatccacaatggtgcgtgcttaacctatttaacaccaca 252  Q
    ||||| |||| ||||||||| |||||||||||||||| |||||||    
T  25389815 ttagatcatcaacaatggtgggtgcttaacctatttagcaccaca 25389771  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 48379474 - 48379514
Alignment:
Q  212 accatccacaatggtgcgtgcttaacctatttaacaccaca 252  Q
    |||||||||||||||| |||||| ||||||||| |||||||    
T  48379474 accatccacaatggtgggtgcttcacctatttagcaccaca 48379514  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 12287076 - 12287120
Alignment:
Q  208 ttagaccatccacaatggtgcgtgcttaacctatttaacaccaca 252  Q
    ||||||||||| |||||||| |||||| |||||||||||||||||    
T  12287076 ttagaccatcctcaatggtgggtgctttacctatttaacaccaca 12287120  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 16529826 - 16529870
Alignment:
Q  208 ttagaccatccacaatggtgcgtgcttaacctatttaacaccaca 252  Q
    |||||||||||||||||||| |||||| ||||||||| |||||||    
T  16529826 ttagaccatccacaatggtgggtgcttcacctatttagcaccaca 16529870  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 56192210 - 56192254
Alignment:
Q  208 ttagaccatccacaatggtgcgtgcttaacctatttaacaccaca 252  Q
    ||||| |||||||||||||| |||||| |||||||||||||||||    
T  56192210 ttagatcatccacaatggtgggtgctttacctatttaacaccaca 56192254  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 13205772 - 13205738
Alignment:
Q  210 agaccatccacaatggtgcgtgcttaacctattta 244  Q
    |||||||||||||||||| ||||||||||||||||    
T  13205772 agaccatccacaatggtgggtgcttaacctattta 13205738  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 29845216 - 29845170
Alignment:
Q  206 tattagaccatccacaatggtgcgtgcttaacctatttaacaccaca 252  Q
    |||||||||||||||||||||| || ||  |||||||||||||||||    
T  29845216 tattagaccatccacaatggtgggtcctccacctatttaacaccaca 29845170  T

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Target: scaffold1940 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1940
Description:

Target: scaffold1940; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 547 - 589
Alignment:
Q  210 agaccatccacaatggtgcgtgcttaacctatttaacaccaca 252  Q
    ||||||||||||||||||  ||||| |||||||||||||||||    
T  547 agaccatccacaatggtgaatgcttcacctatttaacaccaca 589  T

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Target: scaffold0281 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 22336 - 22294
Alignment:
Q  210 agaccatccacaatggtgcgtgcttaacctatttaacaccaca 252  Q
    ||||||||||||||||||  ||||| |||||||||||||||||    
T  22336 agaccatccacaatggtggatgcttcacctatttaacaccaca 22294  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 9622477 - 9622435
Alignment:
Q  210 agaccatccacaatggtgcgtgcttaacctatttaacaccaca 252  Q
    |||||||||||||||||| |||||| ||||||||| |||||||    
T  9622477 agaccatccacaatggtgggtgcttcacctatttagcaccaca 9622435  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 43101044 - 43100999
Alignment:
Q  206 tattagaccatccacaatggtgcgtgcttaacctatttaacaccaca 252  Q
    |||||||||||||| ||||||| |||||||||||||||| |||||||    
T  43101044 tattagaccatcca-aatggtgggtgcttaacctatttagcaccaca 43100999  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 9032803 - 9032761
Alignment:
Q  210 agaccatccacaatggtgcgtgcttaacctatttaacaccaca 252  Q
    |||||||||| ||||||| |||||| |||||||||||||||||    
T  9032803 agaccatccaaaatggtgggtgcttcacctatttaacaccaca 9032761  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 9548460 - 9548504
Alignment:
Q  208 ttagaccatccacaatggtgcgtgcttaacctatttaacaccaca 252  Q
    |||||||||| |||||||||  ||||||||||||||| |||||||    
T  9548460 ttagaccatctacaatggtggatgcttaacctatttagcaccaca 9548504  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 428283 - 428323
Alignment:
Q  210 agaccatccacaatggtgcgtgcttaacctatttaacacca 250  Q
    |||||||||||||||||| |||||| ||||||||| |||||    
T  428283 agaccatccacaatggtgggtgcttcacctatttagcacca 428323  T

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