View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_low_7 (Length: 657)
Name: NF6533_low_7
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_7 |
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| [»] scaffold0186 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 16 - 635
Target Start/End: Original strand, 33199726 - 33200345
Alignment:
| Q |
16 |
atacaaatattaaactaaaaattgaatatttataattttagaatatcaaaactcaaaattataactttattaattctatttctacttcaagnnnnnnnga |
115 |
Q |
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| T |
33199726 |
atacaaatattaaactaaaaattgaatatttataattttagaatatcaaaactcaaaattataactttattaattctatttctacttaaagaaaaaa-ga |
33199824 |
T |
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| Q |
116 |
ggtaccacttaaaaaggattggtacatgcttgtaccacaacaagctcacagcagagtataccatcactcccacaccccaaacaatggcacccagcatctt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33199825 |
ggtaccacttaaaaaggattggtacatgcttgtaccacaacaagctcacagcagagtataccatcactcccacatcccaaacaatggcacccagcatctt |
33199924 |
T |
|
| Q |
216 |
accattgctagtaaaatatgaaaggcaacaaactataccacatatgtgtgagctgaattatatatgcttttatgcaacccgtggtagttga-gctcacta |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33199925 |
accattgctagtaaaatatgaaaggcaacaaactataccacatatgtgtgagctgaattatatatgcttttatgcaacccgtggtagttgaagctcacta |
33200024 |
T |
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| Q |
315 |
atgttatggatccatgttggcatcagtgtctcaatcaagtaataaagtgtaagcctttcaatatatgcgtatgctaattctggataagtttccagaatgt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33200025 |
atgttatggatccatgttggcatcagtgtctcaatcaagtaataaagtgtaagcctttcaatatatgcgtatgctaattctggataagtttccagaatgt |
33200124 |
T |
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| Q |
415 |
ccatcacttgctgcatgtggggacgtggggtgttacttttcaatttcttcatattaatgtgataagggtcgttattgtttgctaccatgcacatttatat |
514 |
Q |
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| T |
33200125 |
ccatcacttgctgcatgtggggacgtggggtgttacttttcaatttcttcatattaatgtgataagggtcgttattgtttgttaccatgcacatttatat |
33200224 |
T |
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| Q |
515 |
ttaactaacaatcgtcaagaccataacatgatatcattatcatttctacgtgttaaagtcccattttgcttaaaagagataatcagtagatgagtttttc |
614 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33200225 |
ttaactaacaatcgtcaagaccataacatgatattattatcatttctacgtgttaaagtcccattttgcttaaaagagataatcagtggatgagtttttc |
33200324 |
T |
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| Q |
615 |
gctataaataaagactttcta |
635 |
Q |
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| T |
33200325 |
gctataaataaagactttcta |
33200345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 456 - 493
Target Start/End: Complemental strand, 44770893 - 44770856
Alignment:
| Q |
456 |
aatttcttcatattaatgtgataagggtcgttattgtt |
493 |
Q |
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| T |
44770893 |
aatttcttcatattaatgtgataagtgtcgttattgtt |
44770856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 4136 - 4077
Alignment:
| Q |
20 |
aaatattaaactaaaaattgaatatttataattttagaatatcaaaactcaaaattataac |
80 |
Q |
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| T |
4136 |
aaatatcaaactaaaaact-aatttttataattttataatattaaaactcaaagttataac |
4077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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