View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_low_70 (Length: 246)
Name: NF6533_low_70
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_70 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 42209757 - 42209988
Alignment:
| Q |
1 |
ttctcgaaattcttagtacccatgctcgtgatcaaaatgatgagagatcaggtagaagtcaatcacacaatggaagtcaatcacacggggaacccacttg |
100 |
Q |
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| T |
42209757 |
ttctcgaaattcttagtacccatgctcgtgatcaaaatgatgagagatcaggtagaagtcaatcacacaatggaagtcaatcacacggggaacccacttg |
42209856 |
T |
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| Q |
101 |
ttggtgcttatgatgatgtgttcaccacacaaaccggatgtggagtgtcgacgaccttgaaaaatgtgacgggaataaagcatgatgtgcaaaccctaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42209857 |
ttggtgcttatgatgatgtgttcaccacacaaaccggatgtggagtgtcgacgaccttgaaaaatgtgatgggaataaagcatgatgtgcaaaccctaga |
42209956 |
T |
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| Q |
201 |
acatgtattgtctaatcttcaaatgcatttct |
232 |
Q |
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|||||||| ||||||||||||||||||||||| |
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| T |
42209957 |
acatgtatggtctaatcttcaaatgcatttct |
42209988 |
T |
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