View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_low_75 (Length: 241)
Name: NF6533_low_75
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_75 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 19300936 - 19301157
Alignment:
| Q |
1 |
tttcgaccgatttcatcttcccgtctttgttcagcttcttctcagcaagctcaaaaccattgtttttagcaccaacaatgttcttaccacggttcataac |
100 |
Q |
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| T |
19300936 |
tttcgaccgatttcatcttcccgtctttgttcagcttcttctcagcaagctcaaaaccattgtttttagcgccaacaatgttcttaccacggttcataac |
19301035 |
T |
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| Q |
101 |
agcaaacttggtatcaacagaaggtgatttttcttcaacaacaactgaattgttatcagaagactctgtcaccaaaggaaatcgacccttataagtagaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
19301036 |
agcaaacttggtatcaacagaaggtgatttttcttcaacaacaactgaattgttatcagaagattctgtcaccaaaggaaaacgacccttataagtagaa |
19301135 |
T |
|
| Q |
201 |
tctctagacagcagcatcaaac |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
19301136 |
tctctagacagcagcatcaaac |
19301157 |
T |
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