View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6533_low_8 (Length: 619)

Name: NF6533_low_8
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6533_low_8
NF6533_low_8
[»] chr1 (10 HSPs)
chr1 (218-491)||(8936369-8936642)
chr1 (218-491)||(8959890-8960163)
chr1 (222-470)||(9475203-9475451)
chr1 (218-491)||(8924728-8925001)
chr1 (218-488)||(9306728-9306998)
chr1 (218-491)||(9335504-9335777)
chr1 (218-451)||(9244985-9245218)
chr1 (510-601)||(9239083-9239174)
chr1 (223-491)||(9359247-9359515)
chr1 (225-445)||(8945870-8946090)
[»] chr3 (1 HSPs)
chr3 (236-451)||(9168414-9168629)
[»] chr6 (1 HSPs)
chr6 (222-444)||(15912720-15912942)


Alignment Details
Target: chr1 (Bit Score: 142; Significance: 3e-74; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 218 - 491
Target Start/End: Original strand, 8936369 - 8936642
Alignment:
Q  218 atagcgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttaccc 317  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  8936369 atagtgaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttaccc 8936468  T
Q  318 gaaaacaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgtttta 417  Q
    || ||||  |||||| |||||| ||||||||| ||||||||||||||||| ||||||||| | |||| |||||| | ||||||||||||  ||||| |||    
T  8936469 gacaacagagttaacattgtgatgttgttttcgcaggataactcataccttggatcaccacatgatgttggatcatccttaagtcgaaatggatgtgtta 8936568  T
Q  418 tgtttgtgattttaccacatgaagaaggtagacaatttgtttggctattattattgttaattgcatcacatgtt 491  Q
    ||||||||||||| || |||||||||||| ||||   ||||||| || || ||||  |||||||||||||||||    
T  8936569 tgtttgtgattttgccgcatgaagaaggtggacagaatgtttggttactagtatttgtaattgcatcacatgtt 8936642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 218 - 491
Target Start/End: Original strand, 8959890 - 8960163
Alignment:
Q  218 atagcgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttaccc 317  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  8959890 atagtgaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttaccc 8959989  T
Q  318 gaaaacaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgtttta 417  Q
    || ||||| ||||| ||||||| ||||||||| ||||||||||| ||||||||||||||| | |||| ||| || | ||||||||||||  |||||  ||    
T  8959990 gacaacaaagttaaggttgtgatgttgttttcgcaggataactcgtacctcggatcaccacatgatgttgggtcatccttaagtcgaaaaggatgtgata 8960089  T
Q  418 tgtttgtgattttaccacatgaagaaggtagacaatttgtttggctattattattgttaattgcatcacatgtt 491  Q
    |||||   ||||| ||||||||||||||| |||||| ||||||| || || ||||  |||||||||||||||||    
T  8960090 tgtttccaattttgccacatgaagaaggtggacaatatgtttggttactagtatttgtaattgcatcacatgtt 8960163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 222 - 470
Target Start/End: Complemental strand, 9475451 - 9475203
Alignment:
Q  222 cgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttacccgaaa 321  Q
    |||||||||||| |||||||| ||||||||||||| ||||||||||  |  |||||||||| || |||||||||||||||||||| ||| ||||||||||    
T  9475451 cgaggaatggagaagcaatcatcctcttgaattccaggatcaactagtctgattgtgtagttatcgtagttgattgacttcacattgtagttacccgaaa 9475352  T
Q  322 acaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgttttatgtt 421  Q
     ||| ||||||||||||| ||||||| | ||||||||||| ||||||||||||||| | | || |||||| ||||| ||||||||| |||||||||||||    
T  9475351 gcaaagttaacgttgtgatgttgtttacgcaggataactcgtacctcggatcaccacaggttgttggatcattcttgagtcgaaacggatgttttatgtt 9475252  T
Q  422 tgtgattttaccacatgaagaaggtagacaatttgtttggctattatta 470  Q
    ||||| ||| ||||||||||||||| |||||||||||||| ||||||||    
T  9475251 tgtgagtttgccacatgaagaaggtggacaatttgtttggttattatta 9475203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 218 - 491
Target Start/End: Original strand, 8924728 - 8925001
Alignment:
Q  218 atagcgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttaccc 317  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||  |  |||||||||| ||||||||||||||| |||||||||||||||| |    
T  8924728 atagcgaggaaaggaggagcaatcaccctcttcaattccgggatcaactattctgattgtgtagttattgtagttgattgatttcacatagtatttactc 8924827  T
Q  318 gaaaacaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgtttta 417  Q
    || || |  ||||| ||||| | ||||||||| ||||||||||| ||||||||||||||| | | || |||||| ||||||||||||||| ||| |||||    
T  8924828 gacaatagagttaaagttgttatgttgttttcgcaggataactcgtacctcggatcaccacaggttgttggatcattcttaagtcgaaacggatatttta 8924927  T
Q  418 tgtttgtgattttaccacatgaagaaggtagacaatttgtttggctattattattgttaattgcatcacatgtt 491  Q
    ||||  ||||||| ||||||||||||||| |||||| ||||||| || || ||||  |||||||||||||||||    
T  8924928 tgttgttgattttgccacatgaagaaggtggacaatatgtttggttactagtatttgtaattgcatcacatgtt 8925001  T

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Target: chr1; HSP #5
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 218 - 488
Target Start/End: Complemental strand, 9306998 - 9306728
Alignment:
Q  218 atagcgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttaccc 317  Q
    ||||||||| ||||||||||||||||| |||||||||||  |||||||||| |  |||| |||||   ||||||||||||| |||||||||||||||||     
T  9306998 atagcgaggcatggaggagcaatcaccttcttgaattccaagatcaactactctcattgagtagtttctgtagttgattgatttcacatagtatttacct 9306899  T
Q  318 gaaaacaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgtttta 417  Q
    |||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||  |   ||||||||| |||| |||||||||  |||||||||    
T  9306898 gaaaacaaagttaacgttgtgatgttgttttcgcaggataactcatacctcggatcaccgcagtttgctggatcattctgaagtcgaaaaggatgtttta 9306799  T
Q  418 tgtttgtgattttaccacatgaagaaggtagacaatttgtttggctattattattgttaattgcatcacat 488  Q
    ||||| ||||| | |||||||| || | | |||||| ||||||| ||||| || |  ||||||||| ||||    
T  9306798 tgtttctgattgtgccacatgatgaggatggacaatatgtttggttattagtaatagtaattgcataacat 9306728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 218 - 491
Target Start/End: Original strand, 9335504 - 9335777
Alignment:
Q  218 atagcgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttaccc 317  Q
    ||||||||||||||||||| ||||||| |||| |||||| |||||||||| || |||||||||||   |||||||||||  || |||||||||||||||     
T  9335504 atagcgaggaatggaggagtaatcaccttcttcaattcctggatcaactaaccgaattgtgtagtttatgtagttgatttcctgcacatagtatttacct 9335603  T
Q  318 gaaaacaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgtttta 417  Q
    |||||||  ||||||| ||||| ||||||||| ||||||||||| ||| | ||||||||| | | |||||| || ||||||||||||||| ||||||| |    
T  9335604 gaaaacagagttaacgctgtgatgttgttttcgcaggataactcgtactttggatcaccacaggttgctgggtcattcttaagtcgaaacggatgtttga 9335703  T
Q  418 tgtttgtgattttaccacatgaagaaggtagacaatttgtttggctattattattgttaattgcatcacatgtt 491  Q
    ||||  ||||||| || |||||||||||| |||||| ||||| | ||||  ||||  |||||||||||||||||    
T  9335704 tgttgctgattttgccgcatgaagaaggtggacaatatgttttgttatttgtattagtaattgcatcacatgtt 9335777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 218 - 451
Target Start/End: Complemental strand, 9245218 - 9244985
Alignment:
Q  218 atagcgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttaccc 317  Q
    ||||||||||| ||||||||||  |||||||| ||||||||||||||||| | ||||||||||||  ||||||||||||| |||||||||||| ||||||    
T  9245218 atagcgaggaagggaggagcaactaccctcttcaattccgggatcaactaacaaaattgtgtagttgttgtagttgattgccttcacatagtacttaccc 9245119  T
Q  318 gaaaacaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgtttta 417  Q
    |||||||  ||||||  ||||| ||||||||| ||||||||||||||| ||||||||||| |   || ||| || ||| ||||||||||| ||||||| |    
T  9245118 gaaaacagagttaacactgtgatgttgttttcgcaggataactcatacttcggatcaccacagcttgttgggtcattcataagtcgaaacggatgtttga 9245019  T
Q  418 tgtttgtgattttaccacatgaagaaggtagaca 451  Q
    ||||  ||||||| ||||||||||||||| ||||    
T  9245018 tgttgctgatttttccacatgaagaaggtggaca 9244985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 510 - 601
Target Start/End: Complemental strand, 9239174 - 9239083
Alignment:
Q  510 agtagcagcatcactaccatactaatttggaagaagcataagaatgattccatccctctgctcatgactaatgctgaaatggaacatgtatc 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9239174 agtagcagcatcactaccatactaatttggaagaagcataagaatgattccatccctctgctcatgactaatgctgaaatggaacatgtatc 9239083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 223 - 491
Target Start/End: Original strand, 9359247 - 9359515
Alignment:
Q  223 gaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttacccgaaaa 322  Q
    |||||||||||||||||| |||||||| |||| | |||||||||| || ||||||||| |    ||||||||||  || ||||||||||||||| |||||    
T  9359247 gaggaatggaggagcaattaccctcttcaattactggatcaactagccgaattgtgtaatttacgtagttgatttcctgcacatagtatttacctgaaaa 9359346  T
Q  323 caatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgttttatgttt 422  Q
    ||  ||||||   |||| ||||||||| ||||||||||| ||| ||||||||||| |   || ||| || ||| ||||||||||  |||||  |||||||    
T  9359347 cagagttaacacggtgatgttgttttcgcaggataactcgtacttcggatcaccacagcttgttgggtcattcataagtcgaaaaggatgtgatatgttt 9359446  T
Q  423 gtgattttaccacatgaagaaggtagacaatttgtttggctattattattgttaattgcatcacatgtt 491  Q
    |||||||| || |||||||||||| |||||| ||||||| ||||  ||||  |||||||||||||||||    
T  9359447 gtgattttgccgcatgaagaaggtggacaatatgtttggttatttgtattagtaattgcatcacatgtt 9359515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 225 - 445
Target Start/End: Original strand, 8945870 - 8946090
Alignment:
Q  225 ggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttacccgaaaaca 324  Q
    ||||| || ||||||||||| ||||  ||||| |||||||||| || ||||||||||| ||||||||||||||| || |||| ||||||||| |||| ||    
T  8945870 ggaattgaagagcaatcaccttcttttattccaggatcaactaaccgaattgtgtagttattgtagttgattgattttacatggtatttaccagaaagca 8945969  T
Q  325 atgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgttttatgtttgt 424  Q
       ||||| |||||| ||| ||||| ||||||||||| ||||||||||||||  | | ||||||||| ||||||||||| ||  |||  ||||||||  |    
T  8945970 gctttaacattgtgatgtttttttcgcaggataactcgtacctcggatcaccgcaggttgctggatcattcttaagtcggaagggatactttatgttgct 8946069  T
Q  425 gattttaccacatgaagaagg 445  Q
    |||||| ||||||||||||||    
T  8946070 gattttgccacatgaagaagg 8946090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 9e-47; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 236 - 451
Target Start/End: Original strand, 9168414 - 9168629
Alignment:
Q  236 gcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttacccgaaaacaatgttaacgtt 335  Q
    ||||||||| ||||  ||||| ||||||||||| |  ||||||||||  |||||||||||||| |||||||||||||||||| ||||||   ||| ||||    
T  9168414 gcaatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtatttaccccaaaacagacttagcgtt 9168513  T
Q  336 gtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgttttatgtttgtgattttaccac 435  Q
    |||| ||||||||||||||||||||| ||||||||||||||| |   || |||||| || |||||||| ||| |||||||||||||| | ||||| ||||    
T  9168514 gtgatgttgttttcacaggataactcgtacctcggatcaccacagtttgttggatcatttttaagtcggaacggatgttttatgtttctcattttgccac 9168613  T
Q  436 atgaagaaggtagaca 451  Q
    ||||||||||| ||||    
T  9168614 atgaagaaggtggaca 9168629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 222 - 444
Target Start/End: Complemental strand, 15912942 - 15912720
Alignment:
Q  222 cgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttacccgaaa 321  Q
    ||||||||||||||||||||||||||||| |  |||| |||||||| || |||||||||||  || |||||||||  |  ||||||||| ||||| ||||    
T  15912942 cgaggaatggaggagcaatcaccctcttgcaacccggcatcaactaacctaattgtgtagtttttatagttgatttccaacacatagtacttacctgaaa 15912843  T
Q  322 acaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgttttatgtt 421  Q
    |||   |||| ||||||| ||||||||| ||||||||||| || |||||||| ||| | |  ||||| || ||||||||||||||  |||||||||||||    
T  15912842 acagatttaaggttgtgatgttgttttcgcaggataactcgtagctcggatccccacaggtcgctgggtcattcttaagtcgaaatggatgttttatgtt 15912743  T
Q  422 tgtgattttaccacatgaagaag 444  Q
      |||||||||| ||||||||||    
T  15912742 gctgattttaccgcatgaagaag 15912720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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