View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6533_low_80 (Length: 238)

Name: NF6533_low_80
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6533_low_80
NF6533_low_80
[»] chr7 (6 HSPs)
chr7 (1-220)||(17735716-17735935)
chr7 (1-222)||(17708060-17708281)
chr7 (1-222)||(17717884-17718105)
chr7 (9-222)||(17744895-17745108)
chr7 (9-222)||(16721937-16722150)
chr7 (9-222)||(17698951-17699164)
[»] chr3 (15 HSPs)
chr3 (29-169)||(46490549-46490689)
chr3 (1-97)||(46483960-46484056)
chr3 (36-156)||(46538838-46538958)
chr3 (1-108)||(46473830-46473937)
chr3 (1-181)||(45883852-45884032)
chr3 (1-181)||(46531747-46531927)
chr3 (1-204)||(46554304-46554507)
chr3 (1-157)||(46479642-46479798)
chr3 (1-85)||(46549104-46549188)
chr3 (15-178)||(5156076-5156239)
chr3 (15-178)||(5160106-5160268)
chr3 (61-175)||(46544291-46544405)
chr3 (124-159)||(46549227-46549262)
chr3 (15-85)||(51943814-51943884)
chr3 (11-87)||(46526552-46526627)
[»] chr4 (2 HSPs)
chr4 (30-171)||(15555850-15555991)
chr4 (31-85)||(35155342-35155396)
[»] chr8 (1 HSPs)
chr8 (124-179)||(9692958-9693013)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 17735935 - 17735716
Alignment:
Q  1 catcaaaagaactgataaactgattattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17735935 catcaaaagaactgataaactgattattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttga 17735836  T
Q  101 agtatcaaacggtcgtttccaaactcctttgaagtataatgcattagcaaagatgagactggttaagctgtcaactgacccgcgtggaagaagatcatta 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17735835 agtatcaaacggtcgtttccaaactcctttgaagtatagtgcattcgcaaagatgaggctggttaagctgtcaactgacccgcgtggaagaagatcatta 17735736  T
Q  201 ataaacccctttgtctcctt 220  Q
    ||||||||||||||||||||    
T  17735735 ataaacccctttgtctcctt 17735716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 17708281 - 17708060
Alignment:
Q  1 catcaaaagaactgataaactgattattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttga 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17708281 catcaaaagaactgataaactgatcattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttga 17708182  T
Q  101 agtatcaaacggtcgtttccaaactcctttgaagtataatgcattagcaaagatgagactggttaagctgtcaactgacccgcgtggaagaagatcatta 200  Q
    ||||||||||||||||| ||||||||||||||| |||| |||||||||||| ||||| |||||||||||||||||||||| | ||||||||||||  |||    
T  17708181 agtatcaaacggtcgttgccaaactcctttgaaatatagtgcattagcaaatatgaggctggttaagctgtcaactgacctgtgtggaagaagattttta 17708082  T
Q  201 ataaacccctttgtctcctttt 222  Q
    |||| ||| |||||||||||||    
T  17708081 ataagcccttttgtctcctttt 17708060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 17718105 - 17717884
Alignment:
Q  1 catcaaaagaactgataaactgattattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttga 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17718105 catcaaaagaactgataaactgatcattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttga 17718006  T
Q  101 agtatcaaacggtcgtttccaaactcctttgaagtataatgcattagcaaagatgagactggttaagctgtcaactgacccgcgtggaagaagatcatta 200  Q
    ||||||||| ||| ||||||| ||||||||||| |||| |||||| ||||| || ||||| |||||||||| |||||| ||  || |||||||||  |||    
T  17718005 agtatcaaagggttgtttccacactcctttgaaatatagtgcatttgcaaatattagactcgttaagctgtgaactgagccaggttgaagaagattttta 17717906  T
Q  201 ataaacccctttgtctcctttt 222  Q
    |||| ||| |||||||||||||    
T  17717905 ataagcccttttgtctcctttt 17717884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 17745108 - 17744895
Alignment:
Q  9 gaactgataaactgattattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttgaagtatcaa 108  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  17745108 gaactgataaactgatcattcttgctggtcataaagggaacctttactgacttgccgttaagaaggtcaaaatcatagtccttcgtttttgaagtatcaa 17745009  T
Q  109 acggtcgtttccaaactcctttgaagtataatgcattagcaaagatgagactggttaagctgtcaactgacccgcgtggaagaagatcattaataaaccc 208  Q
    ||  | ||||||| |||||||||||||||| ||||||||||||||| || ||||||||||||| |||||| ||| ||||||||||||| | ||||| |||    
T  17745008 acttttgtttccatactcctttgaagtatagtgcattagcaaagattaggctggttaagctgttaactgatccgtgtggaagaagatcttgaataagccc 17744909  T
Q  209 ctttgtctcctttt 222  Q
     ||||||| |||||    
T  17744908 ttttgtcttctttt 17744895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 16722150 - 16721937
Alignment:
Q  9 gaactgataaactgattattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttgaagtatcaa 108  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  16722150 gaactgataaactgatcattcttgctggtcataaatggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttgtagtatcga 16722051  T
Q  109 acggtcgtttccaaactcctttgaagtataatgcattagcaaagatgagactggttaagctgtcaactgacccgcgtggaagaagatcattaataaaccc 208  Q
    || || ||||||| ||||||||||| |||| |||||||||||||||||| | ||||||||||| |||||| ||  ||||||||||||  ||||||| |||    
T  16722050 actgttgtttccacactcctttgaaatatagtgcattagcaaagatgaggcgggttaagctgttaactgagccaggtggaagaagatttttaataagccc 16721951  T
Q  209 ctttgtctcctttt 222  Q
     |||||||||||||    
T  16721950 ttttgtctcctttt 16721937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 17699164 - 17698951
Alignment:
Q  9 gaactgataaactgattattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttgaagtatcaa 108  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  17699164 gaactgataaactgatcattcttgctggtcataaatggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttgtagtatcga 17699065  T
Q  109 acggtcgtttccaaactcctttgaagtataatgcattagcaaagatgagactggttaagctgtcaactgacccgcgtggaagaagatcattaataaaccc 208  Q
    || || ||||||| ||||||||||| |||| |||||||||||||||||| | ||||||||||| |||||| ||  ||||||||||||  ||||||| |||    
T  17699064 actgttgtttccacactcctttgaaatatagtgcattagcaaagatgaggcgggttaagctgttaactgagccaggtggaagaagatttttaataagccc 17698965  T
Q  209 ctttgtctcctttt 222  Q
     |||||||||||||    
T  17698964 ttttgtctcctttt 17698951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 169
Target Start/End: Complemental strand, 46490689 - 46490549
Alignment:
Q  29 cttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttgaagtatcaaacggtcgtttccaaactcct 128  Q
    |||||| ||||| ||||||||||| | |||  ||||||| | ||||| |||||||||||| ||||||||||||| |||||||      ||||| ||||||    
T  46490689 cttgctagtcatgaagggaaccttaattgagctgccattcaaaaggtgaaaatcatagtctttcgtttttgaagcatcaaacttatcattccacactcct 46490590  T
Q  129 ttgaagtataatgcattagcaaagatgagactggttaagct 169  Q
    |||||||||| ||||||||||| ||| || |||||||||||    
T  46490589 ttgaagtatagtgcattagcaatgattagcctggttaagct 46490549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 46484056 - 46483960
Alignment:
Q  1 catcaaaagaactgataaactgattattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttt 97  Q
    |||||||||  || |||||||| || |||||||| ||||||||||||||||| |||||  ||||||||||||||| |||||||||||| || |||||    
T  46484056 catcaaaagctctaataaactgcttcttcttgctagtcataaagggaaccttgactgagctgccattgagaaggtgaaaatcatagtcttttgtttt 46483960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 46538958 - 46538838
Alignment:
Q  36 gtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttgaagtatcaaacggtcgtttccaaactcctttgaagt 135  Q
    ||||| ||||||||||| |||||  ||||||| ||||||| |||||||||||| || |||||||||||||||| |    ||  ||| |||||||||||||    
T  46538958 gtcatgaagggaaccttgactgagctgccattaagaaggttaaaatcatagtcttttgtttttgaagtatcaacctcctgtaaccatactcctttgaagt 46538859  T
Q  136 ataatgcattagcaaagatga 156  Q
    ||| |||||| ||||||||||    
T  46538858 atagtgcatttgcaaagatga 46538838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 46473937 - 46473830
Alignment:
Q  1 catcaaaagaactgataaactgattattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttga 100  Q
    |||||||||  || |||||||| || |||||||| |||||||||| |||||| |||||  ||||||||||||||| |||||||||||| || ||| ||||    
T  46473937 catcaaaagctctaataaactgcttcttcttgctagtcataaaggaaaccttaactgagctgccattgagaaggtaaaaatcatagtcttttgttgttga 46473838  T
Q  101 agtatcaa 108  Q
    || |||||    
T  46473837 agcatcaa 46473830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 45883852 - 45884032
Alignment:
Q  1 catcaaaagaactgataaactgattattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttga 100  Q
    |||||||||  || ||||| ||||  |||||||||||||| |||||||| || |||||  | |||||  |||  | |||||| ||||  || ||||| ||    
T  45883852 catcaaaagctctaataaattgatctttcttgctggtcatgaagggaactttgactgaactaccattatgaatatgaaaatcgtagtattttgttttcga 45883951  T
Q  101 agtatcaaacggtcgtttccaaactcctttgaagtataatgcattagcaaagatgagactggttaagctgtcaactgaccc 181  Q
    || |||||||||| | |||||  |||| || ||||| |||||||||||||| ||||| ||||||||| ||| |||||||||    
T  45883952 aggatcaaacggttgattccatgctcccttaaagtacaatgcattagcaaatatgagtctggttaagttgttaactgaccc 45884032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 46531927 - 46531747
Alignment:
Q  1 catcaaaagaactgataaactgattattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttga 100  Q
    ||||||||| | | |||||||| || |||||||| ||||| ||||||||||| | |||  |||||  |||||||| |||||||| ||| || ||||||||    
T  46531927 catcaaaagcatttataaactgcttcttcttgctagtcatgaagggaaccttaattgagctgccaccgagaaggtgaaaatcatggtcttttgtttttga 46531828  T
Q  101 agtatcaaacggtcgtttccaaactcctttgaagtataatgcattagcaaagatgagactggttaagctgtcaactgaccc 181  Q
    || |||||| ||| | | |||  |||| || ||||| | |||||||||||| ||||| |  |||||||| |||| ||||||    
T  46531827 agcatcaaatggttgatgccatgctccattaaagtagagtgcattagcaaaaatgagtccagttaagctatcaattgaccc 46531747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 46554304 - 46554507
Alignment:
Q  1 catcaaaagaactgataaactgattattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttga 100  Q
    ||||||||  ||||||||||||| | | | |||||||| | ||||||||||| | |||  | ||||  ||||||| |||||||||||| || |||| |||    
T  46554304 catcaaaaacactgataaactgactctccctgctggtcttgaagggaaccttgaatgagctaccatcaagaaggtgaaaatcatagtcttttgtttctga 46554403  T
Q  101 agtatcaaacggtcgtttccaaactcctttgaagtataatgcattagcaaagatgagactggttaagctgtcaactgacccgcgtggaagaagatcatta 200  Q
    ||  ||||||||| | | |||  | ||||| || |||| |||||||||||| ||||| |||||||| || |||| ||||||||  | ||||| |||| ||    
T  46554404 agcgtcaaacggttgatgccatgcacctttaaaatatagtgcattagcaaaaatgagtctggttaaactatcaattgacccgcacgaaagaacatcagta 46554503  T
Q  201 ataa 204  Q
    ||||    
T  46554504 ataa 46554507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 46479798 - 46479642
Alignment:
Q  1 catcaaaagaactgataaactgattattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttga 100  Q
    |||||||||  || |||||||| || |||||||||||||| ||||||||||| ||||   | ||||| | ||||| ||| || ||||| | |||||||||    
T  46479798 catcaaaagctctaataaactgcttcttcttgctggtcatgaagggaaccttgactgggctaccattcaaaaggtgaaactcgtagtcttccgtttttga 46479699  T
Q  101 agtatcaaacggtcgtttccaaactcctttgaagtataatgcattagcaaagatgag 157  Q
    || |||||||      |||||  ||||||||||||||| |||||| |||||||||||    
T  46479698 agcatcaaacttatcattccacgctcctttgaagtatagtgcattggcaaagatgag 46479642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 46549104 - 46549188
Alignment:
Q  1 catcaaaagaactgataaactgattattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcata 85  Q
    ||||||||  |||||||||||||| |||| ||||||| || ||||||||||| || ||  ||||||||||||||| |||||||||    
T  46549104 catcaaaaacactgataaactgatcattcctgctggttatgaagggaaccttgaccgagctgccattgagaaggtgaaaatcata 46549188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 178
Target Start/End: Complemental strand, 5156239 - 5156076
Alignment:
Q  15 ataaactgattattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttgaagtatcaaacggtc 114  Q
    ||||||||||| | || ||||||||| ||||||||||| || ||  ||||||| | ||||| |||||||||||| ||||||||  ||  |||||||        
T  5156239 ataaactgattctcctcgctggtcatgaagggaaccttgaccgagctgccattcaaaaggtgaaaatcatagtctttcgttttcaaaacatcaaacttct 5156140  T
Q  115 gtttccaaactcctttgaagtataatgcattagcaaagatgagactggttaagctgtcaactga 178  Q
       ||||  ||||||| ||||| | |||||||||||||||||| | ||||||||| ||||||||    
T  5156139 cactccatgctcctttaaagtagagtgcattagcaaagatgaggcgggttaagctatcaactga 5156076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 178
Target Start/End: Complemental strand, 5160268 - 5160106
Alignment:
Q  15 ataaactgattattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttgaagtatcaaacggtc 114  Q
    ||||||||||| | || ||||||||| ||||||||||| |||||  | ||||| | ||||| |||||||||||| |||||||| |||  |||||||        
T  5160268 ataaactgattctcctcgctggtcatgaagggaaccttgactgagct-ccattcaaaaggtgaaaatcatagtctttcgttttcgaaacatcaaacttat 5160170  T
Q  115 gtttccaaactcctttgaagtataatgcattagcaaagatgagactggttaagctgtcaactga 178  Q
       ||||  ||||||| ||||| | |||||||||||||||||| |||||||| || ||||||||    
T  5160169 cactccatgctcctttaaagtagagtgcattagcaaagatgagtctggttaacctatcaactga 5160106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 46544405 - 46544291
Alignment:
Q  61 tgccattgagaaggtcaaaatcatagtccttcgtttttgaagtatcaaacggtcgtttccaaactcctttgaagtataatgcattagcaaagatgagact 160  Q
    ||||||||||||||| |||||||||||| || ||||||||||||||||||        |||  ||||||||||||||| ||| || |||||||||||  |    
T  46544405 tgccattgagaaggttaaaatcatagtcttttgtttttgaagtatcaaactcctccgaccatgctcctttgaagtatagtgcgtttgcaaagatgaggtt 46544306  T
Q  161 ggttaagctgtcaac 175  Q
    ||||||||| |||||    
T  46544305 ggttaagctatcaac 46544291  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 46549227 - 46549262
Alignment:
Q  124 ctcctttgaagtataatgcattagcaaagatgagac 159  Q
    |||||||||||||||||||||| |||||||||||||    
T  46549227 ctcctttgaagtataatgcatttgcaaagatgagac 46549262  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 51943884 - 51943814
Alignment:
Q  15 ataaactgattattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcata 85  Q
    |||||||| || || ||||||||||| ||||||||||| |||||  | ||||| ||||||| |||||||||    
T  51943884 ataaactgcttcttattgctggtcatgaagggaaccttgactgagctaccatttagaaggtgaaaatcata 51943814  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 46526552 - 46526627
Alignment:
Q  11 actgataaactgattattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagt 87  Q
    ||||||||| ||  |||||| ||||||||| ||||||||||| |||||  ||||||| | ||||| |||||||||||    
T  46526552 actgataaattgtctattctcgctggtcatgaagggaaccttgactgagctgccattta-aaggtgaaaatcatagt 46526627  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 171
Target Start/End: Complemental strand, 15555991 - 15555850
Alignment:
Q  30 ttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttgaagtatcaaacggtcgtttccaaactcctt 129  Q
    |||||| ||||||| |||||||| | |||  | ||||||||||||| |||||||||||| |||||||| |||| |||||||    | | ||| | |||||    
T  15555991 ttgctgctcataaacggaaccttgagtgagctaccattgagaaggtgaaaatcatagtctttcgttttggaagcatcaaacttctgataccatagtcctt 15555892  T
Q  130 tgaagtataatgcattagcaaagatgagactggttaagctgt 171  Q
    | ||||| | |||||| ||||||||||| |||||||||||||    
T  15555891 taaagtacagtgcatttgcaaagatgagtctggttaagctgt 15555850  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 35155396 - 35155342
Alignment:
Q  31 tgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcata 85  Q
    |||||||||| ||||||||||| |||||  ||||||| ||||||| |||||||||    
T  35155396 tgctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaaatcata 35155342  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 9692958 - 9693013
Alignment:
Q  124 ctcctttgaagtataatgcattagcaaagatgagactggttaagctgtcaactgac 179  Q
    ||||||| || || |||||||||||||||||||| |||||||||||||||||||||    
T  9692958 ctcctttaaaatacaatgcattagcaaagatgagtctggttaagctgtcaactgac 9693013  T

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