View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6533_low_86 (Length: 229)
Name: NF6533_low_86
Description: NF6533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6533_low_86 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 22800355 - 22800571
Alignment:
| Q |
7 |
ggattactatcaatgatactgttcgattctcattttcaaaaacggaacgttgtaattgaaaaaatttgagggttggagaagatgaagatgaatgggttta |
106 |
Q |
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|||||||||||||| |||||||||||| ||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
22800355 |
ggattactatcaattatactgttcgat---catttccaaaaacggaacgttgcaattgaaaaactttgagggttggagaagatgaagttgaatgggttta |
22800451 |
T |
|
| Q |
107 |
tgagaaggaatagaataaggag-atgcacatatgatgcttttaatctcta--------ttttgatcagagggttcataaatattctcaccattctcatat |
197 |
Q |
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|||||||||||||||||||||| | ||| |||||| |||||||||||| | |||||||||||| |||||||||||||||||||||||||||| |
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| T |
22800452 |
tgagaaggaatagaataaggagaaggcatatatgaggcttttaatctcaatcatctgtttttgatcagagaattcataaatattctcaccattctcatat |
22800551 |
T |
|
| Q |
198 |
aagaaatgcattctcacagg |
217 |
Q |
| |
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|||||||||||||||||||| |
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| T |
22800552 |
aagaaatgcattctcacagg |
22800571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 217
Target Start/End: Complemental strand, 22799964 - 22799852
Alignment:
| Q |
113 |
ggaatagaataaggagatgcacatatgatgcttttaatctctat--------tttgatcagagggttcataaatattctcaccattctcatataagaaat |
204 |
Q |
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||||||||||||||||| |||||||||| |||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
22799964 |
ggaatagaataaggagaggcacatatgaggcttttaatctcaatcatctctttttgatcagagggttcataaatattctcacgattctcatataagaaat |
22799865 |
T |
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| Q |
205 |
gcattctcacagg |
217 |
Q |
| |
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||||||||||||| |
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| T |
22799864 |
gcattctcacagg |
22799852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 40705568 - 40705521
Alignment:
| Q |
166 |
agggttcataaatattctcaccattctcatataagaaatgcattctca |
213 |
Q |
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| T |
40705568 |
agggttaataactattctcaccattctcatataaataatgcattctca |
40705521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 76 - 217
Target Start/End: Complemental strand, 18371529 - 18371380
Alignment:
| Q |
76 |
gggttggagaagatgaagatgaatgggtttatgagaaggaatagaataaggagatgcacatatgatgcttttaatctcta--------ttttgatcagag |
167 |
Q |
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||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| | |||||||||||| |
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| T |
18371529 |
gggttggagaatatgaagttgaatgggtttatgagatggaatagaataaggagaggcacatatgaggcttttaatctcaatcatctgtttttgatcagag |
18371430 |
T |
|
| Q |
168 |
ggttcataaatattctcaccattctcatataagaaatgcattctcacagg |
217 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
18371429 |
ggttcataaatattctcaccattctcttataagaaatgcattctcgcagg |
18371380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 23398775 - 23398880
Alignment:
| Q |
88 |
atgaagatgaatgggtttatgagaaggaatagaataaggagatgcacatatgatgcttttaatctcta--------ttttgatcagagggttcataaata |
179 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| | |||||||||||||||||||||||| |
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| T |
23398775 |
atgaagttgaatgggtttatgagaaggaatagaataaggagaggcacatatgagacttttaatctcaatcatttgtttttgatcagagggttcataaata |
23398874 |
T |
|
| Q |
180 |
ttctca |
185 |
Q |
| |
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|||||| |
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|
| T |
23398875 |
ttctca |
23398880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 6105862 - 6105815
Alignment:
| Q |
166 |
agggttcataaatattctcaccattctcatataagaaatgcattctca |
213 |
Q |
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|||||| |||| |||||||||||||||||||||| |||||||||||| |
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| T |
6105862 |
agggttaataactattctcaccattctcatataaataatgcattctca |
6105815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 23398874 - 23398902
Alignment:
| Q |
188 |
attctcatataagaaatgcattctcacag |
216 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
23398874 |
attctcatataagaaatgcattctcacag |
23398902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 53523762 - 53523813
Alignment:
| Q |
166 |
agggttcataaatattctcaccattctcatataagaaatgcattctcacagg |
217 |
Q |
| |
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||||| ||||| |||||||| | ||||||||||||||||||||||| ||||| |
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| T |
53523762 |
agggtccataattattctcatcgttctcatataagaaatgcattcttacagg |
53523813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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