View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6534_high_13 (Length: 375)
Name: NF6534_high_13
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6534_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 32126742 - 32126391
Alignment:
| Q |
18 |
atttcatcggagtgaaaacaatcaaaattgatggaaaagtggtttcacttaactcgagtttgttgtc-------aacaagggtgttggtggaacaaagat |
110 |
Q |
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| T |
32126742 |
atttcatcggagtgaaaacaatcaaaattgatggaaaagtggtttcacttaactcgagtttgttgtctatcgacaacaagggtgttggtggaacaaagat |
32126643 |
T |
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| Q |
111 |
tagtacggttgatccttacatggttctagaagcttctatttacaaagcagttacagacgcttttgtgaaagcatctgttgcaagaaacatatcgatagag |
210 |
Q |
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| T |
32126642 |
tagtacggttgatccttacacggttctagaagcttctatttacaaagcagttacagacgcttttgtgaaagcatctgttgcaagaaacataacaacagag |
32126543 |
T |
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| Q |
211 |
gattcatctccgccttttgaattttgttatagttttgacaatttgccagggacgccattgggtgcatctgtgcctacgattgagcttgcttcacagaaca |
310 |
Q |
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| T |
32126542 |
gattcatctccgccttttgaattttgttatagttttgacaatttgccagggacgccattgggtgcgtctgtgcctacaattgagcttcttttacagaaca |
32126443 |
T |
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| Q |
311 |
atgtgatttggagcatgtttggtgcaaattcgatggtgaatataaatgatga |
362 |
Q |
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| T |
32126442 |
atgtgatttggagcatgtttggtgcaaattcgatggtgaatataaatgatga |
32126391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 32138543 - 32138195
Alignment:
| Q |
18 |
atttcatcggagtgaaaacaatcaaaattgatggaaaagtggtttcacttaactcgagtttgttgtc-------aacaagggtgttggtggaacaaagat |
110 |
Q |
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| T |
32138543 |
atttcatcggcgtgaaaacaataaaaatcgatgaaaaagttgtttcacttaacactagtttgttgtctatagacaataacggtgttggtggaacaaagat |
32138444 |
T |
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| Q |
111 |
tagtacggttgatccttacatggttctagaagcttctatttacaaagcagttacagacgcttttgtgaaagcatctgttgcaagaaacatatcgatagag |
210 |
Q |
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| T |
32138443 |
tagtacggttgatccttacacggttttagaagcttctatttacaaagcagttacagacgctttcgtgaaagcgtctgctgcaagaaacataaagagggtg |
32138344 |
T |
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| Q |
211 |
gattcatctccgccttttgaattttgttatagttttgacaatttgccagggacgccattgggtgcatctgtgcctacgattgagcttgcttcacaga--- |
307 |
Q |
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| T |
32138343 |
ggttcggttgcgccttttgaattttgttacact------aatttgactgggacacgattgggtgcagctgtgcctactattgagctctttttgcaaaatg |
32138250 |
T |
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| Q |
308 |
acaatgtgatttggagcatgtttggtgcaaattcgatggtgaatataaatgatga |
362 |
Q |
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| T |
32138249 |
aaaatgtggtttggaggatatttggtgcaaattcaatggtgagtataaatgatga |
32138195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 91 - 362
Target Start/End: Complemental strand, 32147853 - 32147588
Alignment:
| Q |
91 |
ggtgttggtggaacaaagattagtacggttgatccttacatggttctagaagcttctatttacaaagcagttacagacgcttttgtgaaagcatctgttg |
190 |
Q |
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|||| ||||||||||||||| ||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| |||||||| |||| || |
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| T |
32147853 |
ggtgctggtggaacaaagataagtaccgttgatccttacacagttttggaagcttctatttacaaagcagttacagacgctttcgtgaaagcgtctgctg |
32147754 |
T |
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| Q |
191 |
caagaaacatatcgatagaggattcatctccgccttttgaattttgttatagttttgacaatttgccagggacgccattgggtgcatctgtgcctacgat |
290 |
Q |
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| T |
32147753 |
caagaaacataaaaagggtggattcggttgcaccttttgagttttgttacact------aatgtgactgggacacgattgggtgcggatgtacctactat |
32147660 |
T |
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| Q |
291 |
tgagcttgcttcacagaacaatgtgatttggagcatgtttggtgcaaattcgatggtgaatataaatgatga |
362 |
Q |
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| T |
32147659 |
tgagctttatttgcagaacaatgtgatttggaggatatttggtgcaaattcaatggtgaatataaatgatga |
32147588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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