View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6534_high_15 (Length: 352)
Name: NF6534_high_15
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6534_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 84 - 344
Target Start/End: Original strand, 29091905 - 29092165
Alignment:
| Q |
84 |
catatatgatgtaattgccaagtatactattttgattaaaaatttgcaattttaaaggttgtcctaaagaacttcaagtagttggtggtgatggatttca |
183 |
Q |
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| T |
29091905 |
catatatgatgtaattgccaagtgtactattttgattaaaaaattgtaattttaaaggttgtcctaaagaacttcaagtagttggtggtgatggatttca |
29092004 |
T |
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| Q |
184 |
aggtagtgtagttggttgcaagagtgcatgtgaagcatttggatcagatcaatactgttgcagtggacaatatgctaatccaacaacatgccaaccttct |
283 |
Q |
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| T |
29092005 |
aggtagtgtaattggttgcaagagtgcatgtgaagcatttggatcagatcaatactgttgcagtggacaatatgctaatccaacaacatgccaaccttct |
29092104 |
T |
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| Q |
284 |
ttctattccacaattttcaagaaagcttgtccaagagcttatagctatgcatttgatgatg |
344 |
Q |
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| T |
29092105 |
ttctattccacaattttcaagaaagcttgtccaagagcttatagctatgcatttgatgatg |
29092165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 29091862 - 29091907
Alignment:
| Q |
16 |
atattaacagaggtatgagccgtaatgatgctgttacctgtatcat |
61 |
Q |
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| T |
29091862 |
atattaacagaggtatgagccctaatgatgctgttacctgtatcat |
29091907 |
T |
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