View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6534_high_16 (Length: 350)
Name: NF6534_high_16
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6534_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 36579912 - 36579573
Alignment:
| Q |
17 |
atgtacttctaaaagttaagtactgaattcatgtgttaagaatagctcaattattgaatgtgtaaatatagttgttgnnnnnnngctgtacagttttagg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
36579912 |
atgtacttctaaaagttaagtactgaattcatgtgttaagaatagctcaattattgaatttgtaaatatagttgttgtttttttgctgtacagttttagg |
36579813 |
T |
|
| Q |
117 |
acactaaaatgtgaattcatcattattggtggtgcttccgagtatacattttttaatcaagta--------------ctgataggttggttgataaccga |
202 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36579812 |
acattaaaatgtgaattcatcattattggtggtgcttccgagtatacattttttaatcaagtattggaatattgtcactgataggttggttgataaccga |
36579713 |
T |
|
| Q |
203 |
tttggattcacttgagttgataattcttgtagccaatgcagttaatccatctaagatggagtttacatattaatttcgacaaatgaaaaattcaacctca |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36579712 |
tttggattcacttgagttgataattcttgtagccaatgcagtaaatccatctaagatggagtttacatattaatttcgacaaatgaaaaattcaacctca |
36579613 |
T |
|
| Q |
303 |
tctgcctcatctatctatatcaaatattgaaaatacctttg |
343 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36579612 |
tctgcctcatctatctatatc-aatattgaaaatacctttg |
36579573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University