View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6534_high_19 (Length: 329)
Name: NF6534_high_19
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6534_high_19 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 95 - 329
Target Start/End: Complemental strand, 27419827 - 27419593
Alignment:
| Q |
95 |
ggaagattttcttagtatgattctggcgacgattctgagaaatctaagtccattatctagccaactattctatgttatccttcttttttgagggaatatt |
194 |
Q |
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| T |
27419827 |
ggaagattttcttagtatgattctggcgacgattctgagaaatctaagtccattatctggccaactattatatgttatccttctttttttagggaatatt |
27419728 |
T |
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| Q |
195 |
gtatggtatcttttttaatttatgcaaattccacgttatctctacctaaattagatcgaagtgtcctttaaaagtaacttagttattagtagttatcaag |
294 |
Q |
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| T |
27419727 |
gtatggtatcttttttaatttatgcaaattccacgttatctctacctaaattagatcgaagtgtcctttaaaggtaacttagttattagtagttatcaag |
27419628 |
T |
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| Q |
295 |
gaaattattagttgggttggggttctaactttaga |
329 |
Q |
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| T |
27419627 |
gaaactattaggcggatcgggattctaactttaga |
27419593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 27419878 - 27419815
Alignment:
| Q |
18 |
aaatttgtatagtac--gcctatcagatcatttcgacatataaccggagaaggaagattttctt |
79 |
Q |
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| T |
27419878 |
aaatttgtatagtactagcctatcagatcatatcgacatataacaggagaaggaagattttctt |
27419815 |
T |
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