View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6534_high_20 (Length: 317)
Name: NF6534_high_20
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6534_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 34122403 - 34122692
Alignment:
| Q |
13 |
aaaattggagagaatcgtcgtccattgatgttggttctagataatgttttccaaggctcagaatcctttgtcaatgccttcaaggttcaagttccagatt |
112 |
Q |
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| T |
34122403 |
aaaattggagagaatcgtcgtccattgatgttggttctagataatgttttccaaggctcagaatcctttgtcaatgccttcaaggttcaagttccagatt |
34122502 |
T |
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| Q |
113 |
ataaaattttgataacttctagagttaagtttccacgg-tttcaaacttcattattcttaaagcctcttagcgatgatgatgctgttactgttttccgtc |
211 |
Q |
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| T |
34122503 |
ataaaattttgataacttctagagttaagtttccacgggtttcaaacttcattattcttaaagcctcttagcgatgatgatgctgttactgttttccgtc |
34122602 |
T |
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| Q |
212 |
actttgcactaccaaatgatggaaccacaggatcttacgttcctgatgaagatgatgtacaacaggtttgttatattcatcccatgaata |
301 |
Q |
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| T |
34122603 |
actttgcactaccaaatgatggaaccacaggatcttacgttcctgatgaagatgatgtacaacaggtttgttatattcatcccatgaata |
34122692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 32 - 292
Target Start/End: Original strand, 34110664 - 34110921
Alignment:
| Q |
32 |
gtccattgatgttggttctagataatgttttccaaggctcagaatcctttgtcaatgccttcaaggttcaagttccagattataaaattttgataacttc |
131 |
Q |
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| T |
34110664 |
gtccaatgatgttggttctggataatgtttgcccaggctcagaatccttagttgaggactttcaggttcaagttccagattgtaaaattttgataacttc |
34110763 |
T |
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| Q |
132 |
tagagttaagtttccacggtttcaaacttcattattcttaaagcctcttagcgatgatgatgctgttactgttttccgtcactttgcactaccaaatgat |
231 |
Q |
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| T |
34110764 |
tagagttgagtttccacggttt---agttcactattcttaaagccgctcagagatgatgacgcagttaccctttttggtagctttgcactaccaaatgat |
34110860 |
T |
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| Q |
232 |
ggaaccacaggatcttacgttcctgatgaagatgatgtacaacaggtttgttatattcatc |
292 |
Q |
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| T |
34110861 |
gcaacaagagcaacttatgtacctgctgaaaaatatgtaaaacaggtttgttatattcatc |
34110921 |
T |
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