View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6534_high_22 (Length: 284)
Name: NF6534_high_22
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6534_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 8005562 - 8005318
Alignment:
| Q |
20 |
attgaggaagaacacttgctggttgtgaagcaacgtaccaacaagatattaattggtagaagaaaagaatgttcactttcattttatggtggtgaaaggc |
119 |
Q |
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| T |
8005562 |
attgaggaagaacacttgctggttgtgaagcaacgtaccaacaagatatt----ggtagaagaaaagaatgttcactttcattttatggtggttaaaggc |
8005467 |
T |
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| Q |
120 |
ttttcgaataaattggaaggaaattggttcaaaataattccgatctagaagcaaataagggaggcttatatatttttgtaaaatagagggggtatttgtg |
219 |
Q |
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| T |
8005466 |
ttttcgaataaattggaaggaaattggttcaaaataattccgatctggaagcaaataagggaggcttatgtatttttgtaaaatagagggggtatttgtg |
8005367 |
T |
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| Q |
220 |
acataagagcatacctcaagggaggttaattattgtatttttccctatatttt |
272 |
Q |
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| T |
8005366 |
acataagagcatacctcaagggagg----ttattgtatttttccctatatttt |
8005318 |
T |
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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 192 - 268
Target Start/End: Original strand, 33733137 - 33733209
Alignment:
| Q |
192 |
tttttgtaaaatagagggggtatttgtgacataagagcatacctcaagggaggttaattattgtatttttccctata |
268 |
Q |
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| T |
33733137 |
tttttgtaaaatagaggaggtatttgtgacgtaagagcatacctcaagcaagg----ttattgtatttttccctata |
33733209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 9748245 - 9748315
Alignment:
| Q |
192 |
tttttgtaaaatagagggggtatttgtgacataagagcatacctcaagggaggttaattattgtatttttcccta |
266 |
Q |
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| T |
9748245 |
tttttgtaaaatagagggggtgtcattgacattagaacatacctcaggggagg----ttattgtatttttcccta |
9748315 |
T |
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