View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6534_high_23 (Length: 276)
Name: NF6534_high_23
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6534_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 40000171 - 40000428
Alignment:
| Q |
1 |
ataaactaagagatgaa-gttgttttcagccgcgacgcattctgttagtcatagaataatgtgtatctttctgttgtatctcatttgatttagtcataag |
99 |
Q |
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| T |
40000171 |
ataaactaagagatgaaagttgttttcagccgcgacgcattctgttagtcatagaataatgtgtatctttctgttgtatctcatttgatttagtcataag |
40000270 |
T |
|
| Q |
100 |
tctggttctggtacagattgtattatatgcactttgttcaatgaaattactcacttctatcaagttcctagcgtttcggacattcggatgccgaaaataa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40000271 |
tctggttctggtacagattgtattatatgcactttgttcaatgaaattactcacttctatcaatttcctagcgtttcggacattcggatgccgaaaataa |
40000370 |
T |
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| Q |
200 |
agaacctgctgcatttatttctgttaaaggatattgtcacaggaagcttggccatcct |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40000371 |
agaacctgctgcatttatttctgttaaaggatattgtcacaggaagcttggccatcct |
40000428 |
T |
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