View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6534_high_26 (Length: 251)

Name: NF6534_high_26
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6534_high_26
NF6534_high_26
[»] chr7 (4 HSPs)
chr7 (129-239)||(27418729-27418839)
chr7 (15-120)||(27417527-27417632)
chr7 (83-116)||(3111887-3111920)
chr7 (222-251)||(27418858-27418887)
[»] chr1 (7 HSPs)
chr1 (64-239)||(17137226-17137406)
chr1 (89-127)||(28225952-28225990)
chr1 (89-122)||(11335335-11335368)
chr1 (89-122)||(11493355-11493388)
chr1 (81-122)||(15907723-15907764)
chr1 (83-116)||(18605151-18605184)
chr1 (81-117)||(18605526-18605562)
[»] chr8 (2 HSPs)
chr8 (120-219)||(13174569-13174669)
chr8 (80-122)||(5458887-5458929)
[»] chr5 (4 HSPs)
chr5 (80-122)||(8781957-8781999)
chr5 (80-139)||(8782373-8782436)
chr5 (80-122)||(3390250-3390292)
chr5 (80-122)||(33569732-33569774)
[»] chr4 (6 HSPs)
chr4 (80-122)||(11381097-11381139)
chr4 (88-122)||(11309603-11309637)
chr4 (80-122)||(11381518-11381560)
chr4 (89-126)||(36224701-36224738)
chr4 (89-146)||(22169547-22169606)
chr4 (91-148)||(36308598-36308657)
[»] chr6 (2 HSPs)
chr6 (89-126)||(28470115-28470152)
chr6 (89-126)||(29863185-29863222)
[»] chr2 (1 HSPs)
chr2 (81-126)||(4049917-4049962)
[»] chr3 (1 HSPs)
chr3 (89-146)||(41113712-41113771)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 27418729 - 27418839
Alignment:
Q  129 cttaatttacacaaacctctcaagtgagtaatagtgcctacgtaaaatcaaattacgtttacatcaataattgatatgtaatcttaaataacgtctaaat 228  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27418729 cttaatttacacaaacctcttaagtgagtaatagtacctacgtaaaatcaaattacgtttacctcaataattgatatgtaatcttaaataacgtctaaat 27418828  T
Q  229 tcacgtctacc 239  Q
    |||||||||||    
T  27418829 tcacgtctacc 27418839  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 27417527 - 27417632
Alignment:
Q  15 tattattaatagtaaattgaatttacactaacctctcgtggtgagtacataacctttcatagtgtaattgtacataagtaaactgaattcacactaacct 114  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| |||||| |||    
T  27417527 tattattaaaagtaaattgaatttatactaacctctcgtagtgaatacataacctttcataatgtaattgtacataagtaaactgaatttacactaccct 27417626  T
Q  115 cttgta 120  Q
    ||||||    
T  27417627 cttgta 27417632  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 3111887 - 3111920
Alignment:
Q  83 tgtacataagtaaactgaattcacactaacctct 116  Q
    ||||||||||||||||||||| ||||||||||||    
T  3111887 tgtacataagtaaactgaatttacactaacctct 3111920  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 222 - 251
Target Start/End: Original strand, 27418858 - 27418887
Alignment:
Q  222 tctaaattcacgtctaccttgtatgtagtc 251  Q
    ||||||||||||||||||||||||||||||    
T  27418858 tctaaattcacgtctaccttgtatgtagtc 27418887  T

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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 239
Target Start/End: Complemental strand, 17137406 - 17137226
Alignment:
Q  64 taacctttcatagtgtaattgtacataa-gtaaactgaattcacactaacctctt-gtatata--taaacttaatttacacaaacctctca-agtgagta 158  Q
    |||||| |||||||||||||||||| || ||| |  || || ||||||||||||| |||||||  |||||||||||||||| ||| ||||| ||||||||    
T  17137406 taacctctcatagtgtaattgtacaaaacgtagatcgactttacactaacctctttgtatataagtaaacttaatttacactaacgtctcacagtgagta 17137307  T
Q  159 atagtgcctacgtaaaatcaaattacgtttacatcaataattgatatgtaatcttaaataacgtctaaattcacgtctacc 239  Q
    |||||| | ||||||| ||||||||||||||| | |||||| |||| |||||| ||||||||||| |||||||| ||||||    
T  17137306 atagtgtccacgtaaagtcaaattacgtttacctaaataatagataagtaatcataaataacgtcaaaattcacatctacc 17137226  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 28225952 - 28225990
Alignment:
Q  89 taagtaaactgaattcacactaacctcttgtatatataa 127  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  28225952 taagtaaactgaatttacactaacctcttgtatacataa 28225990  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 11335335 - 11335368
Alignment:
Q  89 taagtaaactgaattcacactaacctcttgtata 122  Q
    ||||||||||||||| ||||||||||||||||||    
T  11335335 taagtaaactgaatttacactaacctcttgtata 11335368  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 11493355 - 11493388
Alignment:
Q  89 taagtaaactgaattcacactaacctcttgtata 122  Q
    ||||||||||||||| ||||||||||||||||||    
T  11493355 taagtaaactgaatttacactaacctcttgtata 11493388  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 15907764 - 15907723
Alignment:
Q  81 attgtacataagtaaactgaattcacactaacctcttgtata 122  Q
    |||| |||||||||||||||||| ||||||||||||| ||||    
T  15907764 attgaacataagtaaactgaatttacactaacctcttatata 15907723  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 18605184 - 18605151
Alignment:
Q  83 tgtacataagtaaactgaattcacactaacctct 116  Q
    ||||||||||||||||||||| ||||||||||||    
T  18605184 tgtacataagtaaactgaatttacactaacctct 18605151  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 18605562 - 18605526
Alignment:
Q  81 attgtacataagtaaactgaattcacactaacctctt 117  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  18605562 attgaacataagtaaactaaattcacactaacctctt 18605526  T

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Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 120 - 219
Target Start/End: Complemental strand, 13174669 - 13174569
Alignment:
Q  120 atatataaacttaatttacacaaacctctcaa-gtgagtaatagtgcctacgtaaaatcaaattacgtttacatcaataattgatatgtaatcttaaata 218  Q
    |||| |||||| ||||||||  |||||||||| |||||||||||| | |||||||||||||||||||||||| | ||||||||||| |||||||||||||    
T  13174669 atatgtaaactgaatttacattaacctctcaaagtgagtaatagtacttacgtaaaatcaaattacgtttaccttaataattgatacgtaatcttaaata 13174570  T
Q  219 a 219  Q
    |    
T  13174569 a 13174569  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 5458929 - 5458887
Alignment:
Q  80 aattgtacataagtaaactgaattcacactaacctcttgtata 122  Q
    ||||| |||||||||||||||||||||||||||||||| ||||    
T  5458929 aattgaacataagtaaactgaattcacactaacctcttatata 5458887  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 8781957 - 8781999
Alignment:
Q  80 aattgtacataagtaaactgaattcacactaacctcttgtata 122  Q
    ||||| |||||||||||||||||||||||||||||||| ||||    
T  8781957 aattgaacataagtaaactgaattcacactaacctcttatata 8781999  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 8782373 - 8782436
Alignment:
Q  80 aattgtacataagtaaactgaattcacactaacctcttgtatata----taaacttaatttaca 139  Q
    ||||| |||||||||||||||||| ||||||||||||| ||||||    |||||||||||||||    
T  8782373 aattgaacataagtaaactgaattgacactaacctcttatatatacacgtaaacttaatttaca 8782436  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 3390250 - 3390292
Alignment:
Q  80 aattgtacataagtaaactgaattcacactaacctcttgtata 122  Q
    ||||| |||||||||||||||||| ||||||||||||| ||||    
T  3390250 aattgaacataagtaaactgaatttacactaacctcttatata 3390292  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 33569732 - 33569774
Alignment:
Q  80 aattgtacataagtaaactgaattcacactaacctcttgtata 122  Q
    ||||| |||||||||||||||||| ||||||||||||| ||||    
T  33569732 aattgaacataagtaaactgaattgacactaacctcttatata 33569774  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 11381097 - 11381139
Alignment:
Q  80 aattgtacataagtaaactgaattcacactaacctcttgtata 122  Q
    ||||| |||||||||||||||||||||||||||||||| ||||    
T  11381097 aattgaacataagtaaactgaattcacactaacctcttatata 11381139  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 122
Target Start/End: Complemental strand, 11309637 - 11309603
Alignment:
Q  88 ataagtaaactgaattcacactaacctcttgtata 122  Q
    |||||||||||||||||||||||||||||| ||||    
T  11309637 ataagtaaactgaattcacactaacctcttatata 11309603  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 11381518 - 11381560
Alignment:
Q  80 aattgtacataagtaaactgaattcacactaacctcttgtata 122  Q
    ||||| |||||||||||||||||| ||||||||||||| ||||    
T  11381518 aattgaacataagtaaactgaattgacactaacctcttatata 11381560  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 36224701 - 36224738
Alignment:
Q  89 taagtaaactgaattcacactaacctcttgtatatata 126  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  36224701 taagtaaactgaatttacactaacctcttttatatata 36224738  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 22169606 - 22169547
Alignment:
Q  89 taagtaaactgaattcacactaacctcttgtat--atataaacttaatttacacaaacct 146  Q
    ||||||||||||||| ||||||||||||| |||  || |||||| ||||||||| |||||    
T  22169606 taagtaaactgaatttacactaacctcttatatacatgtaaactgaatttacactaacct 22169547  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 36308598 - 36308657
Alignment:
Q  91 agtaaactgaattcacactaacctcttgtat--atataaacttaatttacacaaacctct 148  Q
    ||||||||||||| ||||||||||||| |||  || |||||| ||||||||| |||||||    
T  36308598 agtaaactgaatttacactaacctcttatatacatgtaaactgaatttacactaacctct 36308657  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 28470152 - 28470115
Alignment:
Q  89 taagtaaactgaattcacactaacctcttgtatatata 126  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  28470152 taagtaaactgaatttacactaacctcttatatatata 28470115  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 29863185 - 29863222
Alignment:
Q  89 taagtaaactgaattcacactaacctcttgtatatata 126  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  29863185 taagtaaactgaatttacactaacctcttatatatata 29863222  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 4049962 - 4049917
Alignment:
Q  81 attgtacataagtaaactgaattcacactaacctcttgtatatata 126  Q
    |||| |||||||||||||||||| |||||||| |||| ||||||||    
T  4049962 attgaacataagtaaactgaatttacactaacatcttatatatata 4049917  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 41113712 - 41113771
Alignment:
Q  89 taagtaaactgaattcacactaacctcttgtat--atataaacttaatttacacaaacct 146  Q
    ||||||||||||||| ||||||||||||| |||  || |||||| ||||||||| |||||    
T  41113712 taagtaaactgaatttacactaacctcttatatacatgtaaactgaatttacactaacct 41113771  T

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