View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6534_high_28 (Length: 248)
Name: NF6534_high_28
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6534_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 40442113 - 40441949
Alignment:
| Q |
19 |
aaaggtgcatcaatataatcaagcaataataatgagtcgagatgtttcaaagcttaaatcttaacctatcaaaggttctataacgcagattgcagaga-- |
116 |
Q |
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|||| ||||||| |||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||||||||| ||||| |||||||| |
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| T |
40442113 |
aaagatgcatcagtataatcaagcaatgataatgagtcgaggtgtttcaaagcttgaatcttaacctaccaaaggttctataatgcagaatgcagagata |
40442014 |
T |
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| Q |
117 |
--gaccagaatgtaggatctaaaccagttagatgactataaatgactgaccaaggagcaataaca |
179 |
Q |
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| T |
40442013 |
cctaccagaatgcaggatataaaccagttagatgactatgcatgaccgaccaaggagcaataaca |
40441949 |
T |
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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 18812906 - 18812828
Alignment:
| Q |
19 |
aaaggtgcatcaatataatcaagcaataataatgagtcgagatgtttcaaagcttaaatcttaacctatcaaaggttct |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18812906 |
aaaggtgcatcaatataatcaagcaataataatgagtcgagatgtttcaaagcttaaatcttaacctatcaaatgttct |
18812828 |
T |
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