View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6534_high_31 (Length: 237)
Name: NF6534_high_31
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6534_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 8005956 - 8005776
Alignment:
| Q |
18 |
tttacaaaaatctatccnnnnnnnnataggacaaaaatctatctatattaattatttatttgtggacgagtaacttcttaaaaccaagtttttgagcagt |
117 |
Q |
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| T |
8005956 |
tttacaaaaatctatccttttttttataggacaaaaatctatctatattaattatttatttgtggacgagtaacttcttaaaaccaagtttctgagcagt |
8005857 |
T |
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| Q |
118 |
gaataagaagaactggaaaattaagttggtgatgata-taattgggaataacattagaacgacggagaagtgaattgctcc |
197 |
Q |
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| T |
8005856 |
gaataagaagaactggaaaattaagttggtggtgaaactaattgggaataacattagaacgacggagaagtgaattgctcc |
8005776 |
T |
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Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 60 - 176
Target Start/End: Complemental strand, 9849422 - 9849306
Alignment:
| Q |
60 |
ctatattaattatttatttgtggacgagtaacttcttaaaaccaagtttttgagcagtgaataagaagaactggaaaattaagttggtgatgatataatt |
159 |
Q |
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| T |
9849422 |
ctatattaattatttatttgtggattcgtaactttttaaaaccaattttttgagcggtgaataataagaactggaaaattaagttgttggtgaactaatt |
9849323 |
T |
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| Q |
160 |
gggaataacattagaac |
176 |
Q |
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| T |
9849322 |
gggaattacattagaac |
9849306 |
T |
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