View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6534_high_4 (Length: 576)
Name: NF6534_high_4
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6534_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 47 - 570
Target Start/End: Complemental strand, 15015912 - 15015390
Alignment:
| Q |
47 |
gaagacggcggcggtggggggttatacggcggtgacaaggtgtcaggtggatgggtgtaacgtggcattgatgaatgctaaggagtatcataggagacat |
146 |
Q |
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| T |
15015912 |
gaagacggcggcggtgggaggttatacggcggtgacaaggtgtcaggtggatgggtgtaacgtggcattgatgaatgctaaggagtatcataggagacat |
15015813 |
T |
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| Q |
147 |
aaggtttgtgagatgcattctaaggcaccaaaagttgtggtgttgggtttggagcaaagattctgtcaacagtgtagcaggttagagtgttactctgtcg |
246 |
Q |
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| T |
15015812 |
aaggtttgtgagatgcattcaaaggcaccaaaagttgtggtgttgggtttggagcaaagattctgtcaacagtgtagcaggttagtgtgttactctgtcg |
15015713 |
T |
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| Q |
247 |
ttatctcataatactactcctaca------nnnnnnnnnnatcgttgaataagagaaatgtctgagattcgaatccgacttctgcatatgattgtcgtta |
340 |
Q |
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| T |
15015712 |
ttatctcatgatactactcctatattttattttattttttatcgttgaataatagagatgtctgagattcgaacccgattccggcatataattgtcgtta |
15015613 |
T |
|
| Q |
341 |
tatctcacaggactattatattttatttgttnnnnnnnntgttactatgtataatctaatatatttcctcnnnnnnnnnncaaatccaatatatttgttg |
440 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| || || ||||||||||||| |
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| T |
15015612 |
tatctcacaggactattatattttatttgttataaaaaatgttagtatgtataatctaatatatttgctcaaaaa------aattcaaatatatttgttg |
15015519 |
T |
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| Q |
441 |
gtatgaacaaaaaataaatccatatttactagtttaaaatattcctttcaaaaatgattggtacttactaaatccaaatttagcagtaaatattatctca |
540 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15015518 |
gtatgaacaaaaaataaatccatatttactagtttaaaatagtcctttcaaaaatgattggtacttactaaatccaaatttagcagtaaatattatctca |
15015419 |
T |
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| Q |
541 |
tagttctactaatttttatagtataatcta |
570 |
Q |
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| T |
15015418 |
taattctactaattttt-tagtataatcta |
15015390 |
T |
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