View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6534_high_5 (Length: 554)
Name: NF6534_high_5
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6534_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 10 - 536
Target Start/End: Complemental strand, 45122857 - 45122306
Alignment:
| Q |
10 |
attatactagtaacaaacactaacaagaacttgaaaaaggtttattgagagtgccttacaacaaattcagggatcattttaaaagtttactcaaatgtat |
109 |
Q |
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| T |
45122857 |
attatactagtaccaaacactaacaagaacttgaaaaaggtttattgagagtgccttacaacaaattcagggatcattttaaaagtttactcaaatgtat |
45122758 |
T |
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| Q |
110 |
ttaaaaacttgatcattgttatatactttgcatgttttatgacattgcaattaaatgtattgaaattcttatatacatcgcatgttatatgacaatgcaa |
209 |
Q |
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| T |
45122757 |
ttaaaaacttgatcattcttatatactttgcatgttttatgacattgcaattaaatgtattgaaattcttatatacatcgcatgttatatgacaatgcaa |
45122658 |
T |
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| Q |
210 |
ttaaatgtattgaaatataaaagataataagtccaatatattttaaagctaatttcatgtctcagttatcttggacaacaaaccataacttcaacatct- |
308 |
Q |
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| T |
45122657 |
ttaaatgtattgaaatataaaagataataagtccaatatattttaaagctaatttcatgtctcaattatcttggacaacaaaccataacttcaacatctt |
45122558 |
T |
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| Q |
309 |
--------------------aattttgcacagaagctcgagctcaccgagaatgaagagaaaatgtgcgaggtgctttgcgtcactttaaagaaatacag |
388 |
Q |
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| T |
45122557 |
tgccttcacactcaaaaagaaattttgcacagaagctcgagctcaccgagaatgaagagaaaat-------gtgctttgcgtcactttaaagaaatacag |
45122465 |
T |
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| Q |
389 |
acttcaaatcac-----------ttgtaatcaagtttagtgcaccccaaactatccaacaattcataattcctaatcgttgccttttaattttgttgatt |
477 |
Q |
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| T |
45122464 |
acttcaaatcactagtgaatgggttgtaatcaagtttagcgcaccccaaactatccaacaattcataattcctaatcgttgccttttaattttgttgatt |
45122365 |
T |
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| Q |
478 |
atttaatgtttccttgtttgtgcagatattggggaagagaatttagtagtgttgccatt |
536 |
Q |
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| T |
45122364 |
atttaatgtttccttgtttgtgcagatattggggaaaagaatttagtagtgttgccatt |
45122306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 45121969 - 45121904
Alignment:
| Q |
174 |
attcttatatacatcgcatgttatatgacaatgcaattaaatgtattgaaatataaaagataataa |
239 |
Q |
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| T |
45121969 |
attcttatatacattgcatgttatatgacattgtaattaaacgtattaaaatataaaagataataa |
45121904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 45131060 - 45131015
Alignment:
| Q |
263 |
ttcatgtctcagttatcttggacaacaaaccataacttcaacatct |
308 |
Q |
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| T |
45131060 |
ttcatgtctcaattttcttggaccacaaaccataactccaacatct |
45131015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 45122023 - 45121979
Alignment:
| Q |
210 |
ttaaatgtattgaaatataaaagataataagtccaatatatttta |
254 |
Q |
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| T |
45122023 |
ttaaatgtattgaaatataaaagattataagcccaacatttttta |
45121979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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