View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6534_high_7 (Length: 486)
Name: NF6534_high_7
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6534_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 29640142 - 29639676
Alignment:
| Q |
1 |
aaaacataaccaacaacagtgcttctcttcaattgatccatgcctatcggaatagcacttaaactaagaacaacatttaatgaaacttataaaaattcat |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29640142 |
aaaacatccccaacaacagtgcttctcttcaattgatccatgcctatcagaatagcacttaaactaagaacaacatttaatgaaacttataaaaattcat |
29640043 |
T |
|
| Q |
101 |
gtgtgtgaacttcctcttcattcgtttgctacctttgacacggcattcgcaataaaactcataaacaaaatcatcatcatcagcattatcatatccattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29640042 |
gtgtgtgaacttcctcttcattcgtttgctacctttgacacggcattcgcaataaaactcataaacaaaatcatcatcatcagcattatcatatccattt |
29639943 |
T |
|
| Q |
201 |
atatactcatttggatacctaaaatatttcaccctagaattttcaaaacatcttttcgccaaatttccatgaataactagattgtaacacatacgaacat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29639942 |
atatactcatttggatacctaaaatatttcaccctagaattttcaaaacatcttttcgccaaatttccatgaataactagattgtaacacatacgaacat |
29639843 |
T |
|
| Q |
301 |
caagagattcgaggtgaggacaaccatcaaaaatagcaattaaaccatcgttcgtgagtttgtttccccatagctcaagatcccgtagctcgggcattgt |
400 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29639842 |
caagagattcgaggtaaggacaaccatcaaaaatagcaattaaaccatcgttcgtgagtttgtttccccatagctcaagatcccgtagctcgggcattgt |
29639743 |
T |
|
| Q |
401 |
ttttgcaatagcaagtgcttctttgttgcatttgtaacctttgtaagacccacaaagaattcctttg |
467 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29639742 |
ttttgcaatagcaagcgcttctttgttgcatttgtaacctttgtaagacccacaaagaattcctttg |
29639676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 455
Target Start/End: Complemental strand, 29648147 - 29647709
Alignment:
| Q |
18 |
agtgcttctcttcaattgatccatgcctatcggaatagcacttaaa-ctaagaacaacatttaatgaaacttataaaaattcatgtgtgtgaacttcctc |
116 |
Q |
| |
|
|||| |||||||||| |||||||||||| | |||||||||||||| |||||||||| | |||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
29648147 |
agtgattctcttcaaatgatccatgccttttagaatagcacttaaatctaagaacaaaagttaatgaaacttataaaaattcatgtctgtgagcttcctc |
29648048 |
T |
|
| Q |
117 |
ttcattcgtttgctacctttgacacggcattcgcaataaaactcataaacaaaatcatcatcatcagcattatcatatccatttatatactcatttggat |
216 |
Q |
| |
|
||||||| |||||||||| ||| ||| || |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
29648047 |
ttcattcctttgctacctatgaaacgacaatcgcaataaaactcgtaaacaaaatcatcatcatcatcattatcatatccatttatatactcagttggat |
29647948 |
T |
|
| Q |
217 |
acctaaaatatttcaccctagaattttcaaaacatcttttcgccaaatttccatgaataactagattgtaacacatacgaacatcaagagattcgaggtg |
316 |
Q |
| |
|
||||||||||||| | ||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |
|
|
| T |
29647947 |
acctaaaatattttatcctagtattctcaaaacaccttttcgccaaatttccatgaataactagattgtagcacattcgaacatcaagagattcaaggta |
29647848 |
T |
|
| Q |
317 |
aggacaaccatcaaaaatagcaattaaaccatcgttcgtgagtttgtttccccatagctcaagatcccgtagctcgggcattgtttttgcaatagcaagt |
416 |
Q |
| |
|
|||||||||||||| |||||||||| |||||| || ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29647847 |
aggacaaccatcaaggatagcaattagaccatcattggtgagtttgtttccccaaagctcaagatgtcgtagctcgggcattgtttttgcaatagcaagc |
29647748 |
T |
|
| Q |
417 |
gcttctttgttgcatttgtaacctttgtaagacccacaa |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29647747 |
gcttctttgttgcatttgtaacctttgtaagaaccacaa |
29647709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 6046880 - 6046842
Alignment:
| Q |
300 |
tcaagagattcgaggtgaggacaaccatcaaaaatagca |
338 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
6046880 |
tcaagagattcaaggtgaggacaaccatcaagaatagca |
6046842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University