View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6534_high_9 (Length: 453)
Name: NF6534_high_9
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6534_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 40 - 444
Target Start/End: Complemental strand, 11036178 - 11035768
Alignment:
| Q |
40 |
ctactattatgactatcgaaacagagttaacatatgctattatgactattgacaatgcttttgaggtatctattctacggagatttaaggatagacgggg |
139 |
Q |
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| T |
11036178 |
ctactattatgactatcgaaacagagttaacatatgctattatgactattgacaatgcttttgatgtatctattctacggagatttaaggatagacgggg |
11036079 |
T |
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| Q |
140 |
caatattttacaattatgttctcaaatgcaatttcttgtctctcaca---tttaca--agaaaggt--ttcagcaattgtagcaatcaaacacattacta |
232 |
Q |
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| T |
11036078 |
caatattttacaattatgttctcaaatgcaatttcttatctttctctgactgcacagtagaaactcccttaaacaattgtagcaatcaaacacattacta |
11035979 |
T |
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| Q |
233 |
acaactaaatgtgataagaatccaactcattcagttgatacttaatgagaactaaataagcccatggtaaaataaaactcatccatttttaccaacactt |
332 |
Q |
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| T |
11035978 |
acaactaaatgtgataagaatccaactcattcagttgatacttaatgagaactaaataagcccatggtaaaataaaactcatccatttttaccaacagtt |
11035879 |
T |
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| Q |
333 |
cttgattgctgcttaatatacgcccgttcttattttgcttactagtcattgaaactattactcatgtagtcatataagtaaaaatttagttcatagatgt |
432 |
Q |
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| T |
11035878 |
cttgattgctgcttaatatacgcccgttcttattttgcttactagtcattgaaactattactcatgtagtcatataagt-aaaatttagttcatagatgt |
11035780 |
T |
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| Q |
433 |
atgaatgatgat |
444 |
Q |
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| T |
11035779 |
atgaatgttgat |
11035768 |
T |
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