View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6534_low_10 (Length: 412)

Name: NF6534_low_10
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6534_low_10
NF6534_low_10
[»] chr5 (20 HSPs)
chr5 (1-220)||(33698533-33698756)
chr5 (277-396)||(33698357-33698476)
chr5 (277-396)||(33679640-33679759)
chr5 (136-220)||(33679816-33679900)
chr5 (142-217)||(33904399-33904474)
chr5 (140-216)||(33865891-33865967)
chr5 (143-219)||(33762767-33762843)
chr5 (140-219)||(33734305-33734384)
chr5 (140-219)||(33821635-33821714)
chr5 (4-60)||(33734537-33734593)
chr5 (140-210)||(33748786-33748856)
chr5 (140-210)||(33834906-33834976)
chr5 (4-50)||(33904606-33904652)
chr5 (290-351)||(33762641-33762702)
chr5 (288-345)||(33865765-33865822)
chr5 (4-52)||(33867043-33867091)
chr5 (288-355)||(33734172-33734239)
chr5 (7-41)||(33680120-33680154)
chr5 (288-365)||(33834754-33834831)
chr5 (4-60)||(33763367-33763423)
[»] chr8 (1 HSPs)
chr8 (140-217)||(21305875-21305952)
[»] scaffold0001 (2 HSPs)
scaffold0001 (142-211)||(148790-148859)
scaffold0001 (4-50)||(149007-149053)
[»] scaffold0023 (1 HSPs)
scaffold0023 (140-217)||(114205-114282)
[»] scaffold0247 (2 HSPs)
scaffold0247 (143-205)||(22155-22217)
scaffold0247 (5-60)||(21958-22013)
[»] chr7 (2 HSPs)
chr7 (142-211)||(5471194-5471263)
chr7 (4-41)||(5470212-5470249)
[»] scaffold0193 (1 HSPs)
scaffold0193 (140-210)||(25216-25286)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 33698756 - 33698533
Alignment:
Q  1 gccgaggatgaaattgatatgattctaaggttacacaaacttctagggaacaagtaagctatcaagttaattttgttttggttacctatcaaattaaatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  33698756 gccgaggatgaaattgatatgattctaaggttacacaaacttctagggaacaagtaagctatcaagttaattttgttttggttacctatcaagttaaact 33698657  T
Q  101 tttggtgacctaggtaagagtataatat----atgtttgtatgtatagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaag 196  Q
    |||||||||||| |||||||||||||||    |||| |||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  33698656 tttggtgacctaagtaagagtataatatatgtatgtatgtatgtatagatggtctttgattgctgcaaggcttccgggtaggacagctaatgatgtgaag 33698557  T
Q  197 aattattggcacacaaatttgcgc 220  Q
    ||||||||||||||||||||||||    
T  33698556 aattattggcacacaaatttgcgc 33698533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 277 - 396
Target Start/End: Complemental strand, 33698476 - 33698357
Alignment:
Q  277 catgatcaaatctcatgaagttatcaagccacgacctcgaactttttcaactcattcactatggttgaagaagaaacataatttcgtgagtaatggtagt 376  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33698476 catgatcaaatctcatgaagttatcaagcctcgacctcgaactttttcaactcattcactatggttgaagaagaaacataatttcgtgagtaatggtagt 33698377  T
Q  377 gcaacaaaactagtgatttc 396  Q
    ||||||||||||||||||||    
T  33698376 gcaacaaaactagtgatttc 33698357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 277 - 396
Target Start/End: Complemental strand, 33679759 - 33679640
Alignment:
Q  277 catgatcaaatctcatgaagttatcaagccacgacctcgaactttttcaactcattcactatggttgaagaagaaacataatttcgtgagtaatggtagt 376  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||    
T  33679759 catgatcaaatctcatgaagttatcaagcctcgacctcgaactttttcaactcattcactatggttgaagaagaaacgtaattttgtgagtgatggtagt 33679660  T
Q  377 gcaacaaaactagtgatttc 396  Q
    ||||||||||||||||||||    
T  33679659 gcaacaaaactagtgatttc 33679640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 33679900 - 33679816
Alignment:
Q  136 tatgtatagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaaatttgcgc 220  Q
    |||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33679900 tatgtatagatggtcattgattgctgcgaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaaatttgcgc 33679816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 33904474 - 33904399
Alignment:
Q  142 tagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaaatttg 217  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33904474 tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacacatttg 33904399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 33865967 - 33865891
Alignment:
Q  140 tatagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaaattt 216  Q
    |||||||||||  ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||    
T  33865967 tatagatggtcattgattgctgcaagactcccgggtagaacagctaatgatgtgaagaattattggcacacacattt 33865891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 33762843 - 33762767
Alignment:
Q  143 agatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaaatttgcg 219  Q
    ||||||||  ||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||    
T  33762843 agatggtcattgattgctgcaaggcttcccggtagaacagcgaatgatgtgaaaaactattggcacacaaatttgcg 33762767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 33734384 - 33734305
Alignment:
Q  140 tatagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaaatttgcg 219  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||||||||||| || | |||||||||| |||||||    
T  33734384 tatagatggtcattgattgctgcaaggcttcctggtagaactgctaatgatgtgaaaaacttttggcacacacatttgcg 33734305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 33821714 - 33821635
Alignment:
Q  140 tatagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaaatttgcg 219  Q
    |||||||||||  |||||||||||||||||||  ||||||| |||||||||||||| || |||||| ||||| |||||||    
T  33821714 tatagatggtcattgattgctgcaaggcttcctagtagaacggctaatgatgtgaaaaactattggaacacacatttgcg 33821635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 33734593 - 33734537
Alignment:
Q  4 gaggatgaaattgatatgattctaaggttacacaaacttctagggaacaagtaagct 60  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||| | |||||||    
T  33734593 gaggatgaagttgatatgatcctaaggttacacaaacttctagggaataggtaagct 33734537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 33748856 - 33748786
Alignment:
Q  140 tatagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacac 210  Q
    ||||||||| || ||||||||||||| ||||  ||||||||||||||||||||||| || |||||| ||||    
T  33748856 tatagatggacgttgattgctgcaagacttcaaggtagaacagctaatgatgtgaaaaactattggaacac 33748786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 33834976 - 33834906
Alignment:
Q  140 tatagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacac 210  Q
    ||||||||| || ||||||||||||| ||||  ||||||||||||||||||||||| || |||||| ||||    
T  33834976 tatagatggacgttgattgctgcaagacttcaaggtagaacagctaatgatgtgaaaaactattggaacac 33834906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 33904652 - 33904606
Alignment:
Q  4 gaggatgaaattgatatgattctaaggttacacaaacttctagggaa 50  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||    
T  33904652 gaggatgaagttgatatgatgctaaggttacacaaacttctagggaa 33904606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 351
Target Start/End: Complemental strand, 33762702 - 33762641
Alignment:
Q  290 catgaagttatcaagccacgacctcgaactttttcaactcattcactatggttgaagaagaa 351  Q
    ||||||||||| || || | |||||||| ||||||||||||||||| ||||||||| |||||    
T  33762702 catgaagttattaaacctcaacctcgaattttttcaactcattcaccatggttgaacaagaa 33762641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 345
Target Start/End: Complemental strand, 33865822 - 33865765
Alignment:
Q  288 ctcatgaagttatcaagccacgacctcgaactttttcaactcattcactatggttgaa 345  Q
    ||||||||||||| || || | |||||||||||||||| ||||||||| |||||||||    
T  33865822 ctcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggttgaa 33865765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 33867091 - 33867043
Alignment:
Q  4 gaggatgaaattgatatgattctaaggttacacaaacttctagggaaca 52  Q
    ||||||||| ||||||||||| ||||||||||||| ||| |||||||||    
T  33867091 gaggatgaagttgatatgattttaaggttacacaagcttttagggaaca 33867043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 355
Target Start/End: Complemental strand, 33734239 - 33734172
Alignment:
Q  288 ctcatgaagttatcaagccacgacctcgaactttttcaactcattcactatggttgaagaagaaacat 355  Q
    ||||||||||||| || || | |||||||| ||||||||||||||||  ||||||||| | |||||||    
T  33734239 ctcatgaagttattaaaccccaacctcgaattttttcaactcattcatcatggttgaataggaaacat 33734172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 33680154 - 33680120
Alignment:
Q  7 gatgaaattgatatgattctaaggttacacaaact 41  Q
    |||||||||||||||||||||||| ||||||||||    
T  33680154 gatgaaattgatatgattctaaggctacacaaact 33680120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 365
Target Start/End: Complemental strand, 33834831 - 33834754
Alignment:
Q  288 ctcatgaagttatcaagccacgacctcgaactttttcaactcattcactatggttgaagaagaaacataatttcgtga 365  Q
    |||||||||||||||| || || ||   ||||||||||||||||||||  ||||||||   |||||||||||| ||||    
T  33834831 ctcatgaagttatcaaacctcgtccattaactttttcaactcattcaccttggttgaatgggaaacataattttgtga 33834754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 33763423 - 33763367
Alignment:
Q  4 gaggatgaaattgatatgattctaaggttacacaaacttctagggaacaagtaagct 60  Q
    ||||||||| ||||| |||| ||||||||||| ||||||||||| || | |||||||    
T  33763423 gaggatgaagttgatctgatcctaaggttacaaaaacttctaggtaataggtaagct 33763367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 21305952 - 21305875
Alignment:
Q  140 tatagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaaatttg 217  Q
    |||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21305952 tatagatggtcattgattgctggaaggcttccgggtagaacagctaatgatgtgaagaactattggcacacaaatttg 21305875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 148859 - 148790
Alignment:
Q  142 tagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacaca 211  Q
    |||||||||  ||||||||| |||||||||||| ||||||||||||||||| ||||| ||||||||||||    
T  148859 tagatggtcattgattgctggaaggcttccgggaagaacagctaatgatgtaaagaactattggcacaca 148790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 149053 - 149007
Alignment:
Q  4 gaggatgaaattgatatgattctaaggttacacaaacttctagggaa 50  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||||    
T  149053 gaggatgaagtcgatatgatcctaaggttacacaaacttctagggaa 149007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 114205 - 114282
Alignment:
Q  140 tatagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacaaatttg 217  Q
    |||||||||||  ||||||| | ||||||||||| |||||||||||||||||| || || |||||||||||| |||||    
T  114205 tatagatggtcattgattgcgggaaggcttccggctagaacagctaatgatgtcaaaaactattggcacacacatttg 114282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 22155 - 22217
Alignment:
Q  143 agatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattgg 205  Q
    ||||||||  ||||||||| ||||||||| ||||||||||||||||||||||| || ||||||    
T  22155 agatggtcattgattgctggaaggcttccaggtagaacagctaatgatgtgaaaaactattgg 22217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 21958 - 22013
Alignment:
Q  5 aggatgaaattgatatgattctaaggttacacaaacttctagggaacaagtaagct 60  Q
    |||||||| ||||| ||||||||||||||||||| |||||||| || | |||||||    
T  21958 aggatgaagttgatttgattctaaggttacacaaccttctaggcaataggtaagct 22013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 5471194 - 5471263
Alignment:
Q  142 tagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacaca 211  Q
    |||||||||  ||||||||| |||||||||||||||||||||||||  |||||| || |||||| |||||    
T  5471194 tagatggtcattgattgctggaaggcttccgggtagaacagctaatagtgtgaaaaactattggaacaca 5471263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 5470212 - 5470249
Alignment:
Q  4 gaggatgaaattgatatgattctaaggttacacaaact 41  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  5470212 gaggatgaagttgatatgatcctaaggttacacaaact 5470249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 25216 - 25286
Alignment:
Q  140 tatagatggtcgctgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacac 210  Q
    ||||||||| |  ||||||||||||| |||| ||||||| |||||||||||||||| || |||||| ||||    
T  25216 tatagatggacattgattgctgcaagacttcagggtagatcagctaatgatgtgaaaaactattggaacac 25286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University