View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6534_low_11 (Length: 389)
Name: NF6534_low_11
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6534_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 27 - 386
Target Start/End: Complemental strand, 40217849 - 40217479
Alignment:
| Q |
27 |
aataataataaagcttcatcaagcgtcgtgtgtgtcaccgtcgaat-----------acaaacaagttgctgcaatggcaagagagctaagacccgccac |
115 |
Q |
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| T |
40217849 |
aataataataaagcttcatcaagcgtcgtgtgcatcaccgtcgaattgtatattcatacaaacaagctgctgcaatggcaagagagctaagacccgccac |
40217750 |
T |
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| Q |
116 |
aatgaagccatggatggaggttgcaccttcacttcttgagttcccttggaaaccctccaatactcctaagctagagaccatatttgaagatgaagaatgc |
215 |
Q |
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| T |
40217749 |
aatgaagccatggatggaggttgcaccttcacttcttgagttcccttggaaaccctccaatacccctaagctagagaccatatttgaagatgaagaatgt |
40217650 |
T |
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| Q |
216 |
gaagaagatggtcttgctgacttttgattgttttgtactttaaaatgcgtccatattttgtaaatgaatagagagacgttacctaaaacaatcattagcg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40217649 |
gaagaagatggtcttgctgacttttgattgttttgtactttaaaatgcgtccatattttgtaaatgaatagagagacgttacctaaaacaatcattagcg |
40217550 |
T |
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| Q |
316 |
gcagataggattatcaaagattgattgcatttatattttatagatgttattgtcttgatattcttcgacat |
386 |
Q |
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| T |
40217549 |
gcagataggattatcaaagattgattgcatttatattttatagatgttattgtcttgatatgtttcgacat |
40217479 |
T |
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