View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6534_low_12 (Length: 389)
Name: NF6534_low_12
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6534_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 188 - 371
Target Start/End: Complemental strand, 2397215 - 2397032
Alignment:
| Q |
188 |
aaattgttgttcaaataccaaggtaaaataatagacaatcacgtgccaaagccactagacatatttggtcattgactccctcttaattaattgcacatcg |
287 |
Q |
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| T |
2397215 |
aaattgttgttcaaataccaaggtaaaataatagacaatcacgtgccaaagccactagacatatttggtcattgactccctcttaattaattgcacatcg |
2397116 |
T |
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| Q |
288 |
gtccnnnnnnnnnnnnnnnngacaacaaaatagcaccatcggtcttaagagtcaaattttctagcatttacgtacacactttat |
371 |
Q |
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| T |
2397115 |
gtcctcttctcgtttttttttacaacaaaatagcaccatcggtcttaagagtcaaattttctagcatttacgtacacactttat |
2397032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 2397412 - 2397289
Alignment:
| Q |
7 |
tccaagaatatttattctctatcttaccttaaaccacatatagataacggatgagaaatgatatttttacaaatattttgtaacaactctctcccttatt |
106 |
Q |
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||||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
2397412 |
tccaaaaatatttattctctatcttaccttaaagcacacatagataatggatgagaaatgatatttgtacaaatattttgtaacaactctctcccatatt |
2397313 |
T |
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| Q |
107 |
tctactatgtttatattctctatc |
130 |
Q |
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| T |
2397312 |
tctactatgtttttattctctatc |
2397289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 33656698 - 33656731
Alignment:
| Q |
59 |
gagaaatgatatttttacaaatattttgtaacaa |
92 |
Q |
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| T |
33656698 |
gagaaatgatatttgtacaaatattttgtaacaa |
33656731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 34134844 - 34134807
Alignment:
| Q |
57 |
atgagaaatgatatttttacaaatattttgtaacaact |
94 |
Q |
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|||||||||||||||||||||| |||||||||||||| |
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| T |
34134844 |
atgagaaatgatatttttacaaccattttgtaacaact |
34134807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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