View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6534_low_14 (Length: 368)
Name: NF6534_low_14
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6534_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 348
Target Start/End: Original strand, 8998428 - 8998766
Alignment:
| Q |
14 |
attttaaggtcagaggtcgtagttatggatgtgggcgtgcgcccttactcttctaaaaaatccctacaacgtccaccctttgtgggtcccttaactaata |
113 |
Q |
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| T |
8998428 |
attttaaggtcagaggtcgtagttatggatgtgggcgtgcgcccttactcttctaaaaaatccctacaacgtccaccctttgtgggtcccttaactaata |
8998527 |
T |
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| Q |
114 |
cctgcatacacatggaccccacactaacatttt----annnnnnnnaaggttttccctccttactaaatcctttttcttcgccctataacgcttagatga |
209 |
Q |
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| T |
8998528 |
cctgcatacacatggaccccacactaacattttttttatttttttttatgttttccctccttactaaatcctctttcttcgccctataacgctcagatga |
8998627 |
T |
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| Q |
210 |
gaaatcatagatttttcttagtttaatcaagattctaggtttaaatacagcctcgagtatgcagcagcgttaaaacttttagtaaagtttaccgtttaat |
309 |
Q |
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| T |
8998628 |
gaaatcatagatttcttttagtttaatcaagattctaggtttaaatacagtctcggatatgcagcagcgttaaaatttttaataaagtttaccgtttaat |
8998727 |
T |
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| Q |
310 |
ttaaattaaataaaatttgaagaattaatctcaacagtt |
348 |
Q |
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| T |
8998728 |
ttagattaaacaaggtttgaaaaattaatctcaacagtt |
8998766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 31489531 - 31489595
Alignment:
| Q |
227 |
ttagtttaatcaagattctaggtttaaatacagcctcgagtatgcagcagcgttaaaacttttag |
291 |
Q |
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| T |
31489531 |
ttagcttaatcaaggttctgggtttgaatacagctttgggtatgcagcaacgttaaaacttttag |
31489595 |
T |
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