View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6534_low_17 (Length: 343)
Name: NF6534_low_17
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6534_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 325
Target Start/End: Original strand, 42511656 - 42511966
Alignment:
| Q |
15 |
aatatgagatgtaccagacattgagcatatatttttattgcatccagcatctacaccccctatgcctaaggtatgtagtttttgagacatcaacttgttt |
114 |
Q |
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| T |
42511656 |
aatatgagatgcaccagacattgagcatatatttttattgcatccagcatctacaccacctatgcctaaggtatatagtttttgagacatcaacttgttt |
42511755 |
T |
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| Q |
115 |
tcctctgtaacttgatgctcatcatgtgaagatccagactcaccatcaattggcttggatgctggtacactattttccttcagtttggtatcatattgat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||| |
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| T |
42511756 |
tcctctgtaacttgatgctcatcatgtgaagatccagactcaccatcaattggcttggttggtggtacactattttccttccgtttggtatcatattgat |
42511855 |
T |
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| Q |
215 |
gttgaagcccgtaatcacaacatggctccgactgaaaaggtccagcacccactgcaccatctaacttgcaatcttcaaatgcaaaccttgtttctgaaaa |
314 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42511856 |
gttgaagcccgtaatcacaacatggctctgactgaaaaggtccagcacccactgcaccatctaacttgcaatcttcaaatgcaaaccttgtttctgaaaa |
42511955 |
T |
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| Q |
315 |
tttcctgggag |
325 |
Q |
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||||||||||| |
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| T |
42511956 |
tttcctgggag |
42511966 |
T |
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