View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6534_low_18 (Length: 339)
Name: NF6534_low_18
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6534_low_18 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 7305778 - 7306117
Alignment:
| Q |
1 |
acaagtgtaatttttgacttaaaccaaatttcaatcattaaaccacatcacatattgtatcgggatgccgttgctttaccaagctaggcnnnnnnn-cat |
99 |
Q |
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| T |
7305778 |
acaagtgtaatttttgacttaaaccaaatttcaatcatttaaccacatcacatattgtatcgggatgccgttgctttaccaagctaggcaaaaaaaacat |
7305877 |
T |
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| Q |
100 |
atgacattaacatcataacacaatggaaagcagtaagttgaatcaaaatcagttgtcaaactaaaatagcaagatgacttatgaactattaagataaata |
199 |
Q |
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| T |
7305878 |
atgacattaacatcataacacaatggaaagcagtaagttgaatcaaaatcagttgtcaaactaaaatagcaagatgacccatgaactattaagataatta |
7305977 |
T |
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| Q |
200 |
taattagtatactgcattggacataaactaatcagaacattgaaaatgttaggaatttggaatcttcagtacattagaataatcaaacacataaattgac |
299 |
Q |
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| T |
7305978 |
taattagtatactgcattggacataaactaatcagaacattgaaaatgttaggaatttggaatgttcagtacattagaataatcaaacacataaattgat |
7306077 |
T |
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| Q |
300 |
aagaaaaattattgatgcacagactcttgaatttgacaac |
339 |
Q |
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| T |
7306078 |
aagaaaaattattgatgcacagactcttgaatttgacaac |
7306117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 8240593 - 8240553
Alignment:
| Q |
195 |
aaatataattagtatactgcattggacataaactaatcaga |
235 |
Q |
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| T |
8240593 |
aaatataacgagcatactgcattggacataaactaatcaga |
8240553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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