View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6534_low_26 (Length: 251)

Name: NF6534_low_26
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6534_low_26
NF6534_low_26
[»] chr7 (4 HSPs)
chr7 (129-239)||(27418729-27418839)
chr7 (15-120)||(27417527-27417632)
chr7 (83-116)||(3111887-3111920)
chr7 (222-251)||(27418858-27418887)
[»] chr1 (7 HSPs)
chr1 (64-239)||(17137226-17137406)
chr1 (89-127)||(28225952-28225990)
chr1 (89-122)||(11335335-11335368)
chr1 (89-122)||(11493355-11493388)
chr1 (81-122)||(15907723-15907764)
chr1 (83-116)||(18605151-18605184)
chr1 (81-117)||(18605526-18605562)
[»] chr8 (2 HSPs)
chr8 (120-219)||(13174569-13174669)
chr8 (80-122)||(5458887-5458929)
[»] chr5 (4 HSPs)
chr5 (80-122)||(8781957-8781999)
chr5 (80-139)||(8782373-8782436)
chr5 (80-122)||(3390250-3390292)
chr5 (80-122)||(33569732-33569774)
[»] chr4 (6 HSPs)
chr4 (80-122)||(11381097-11381139)
chr4 (88-122)||(11309603-11309637)
chr4 (80-122)||(11381518-11381560)
chr4 (89-126)||(36224701-36224738)
chr4 (89-146)||(22169547-22169606)
chr4 (91-148)||(36308598-36308657)
[»] chr6 (2 HSPs)
chr6 (89-126)||(28470115-28470152)
chr6 (89-126)||(29863185-29863222)
[»] chr2 (1 HSPs)
chr2 (81-126)||(4049917-4049962)
[»] chr3 (1 HSPs)
chr3 (89-146)||(41113712-41113771)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 27418729 - 27418839
Alignment:
Q  129 cttaatttacacaaacctctcaagtgagtaatagtgcctacgtaaaatcaaattacgtttacatcaataattgatatgtaatcttaaataacgtctaaat 228  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27418729 cttaatttacacaaacctcttaagtgagtaatagtacctacgtaaaatcaaattacgtttacctcaataattgatatgtaatcttaaataacgtctaaat 27418828  T
Q  229 tcacgtctacc 239  Q
    |||||||||||    
T  27418829 tcacgtctacc 27418839  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 27417527 - 27417632
Alignment:
Q  15 tattattaatagtaaattgaatttacactaacctctcgtggtgagtacataacctttcatagtgtaattgtacataagtaaactgaattcacactaacct 114  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| |||||| |||    
T  27417527 tattattaaaagtaaattgaatttatactaacctctcgtagtgaatacataacctttcataatgtaattgtacataagtaaactgaatttacactaccct 27417626  T
Q  115 cttgta 120  Q
    ||||||    
T  27417627 cttgta 27417632  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 3111887 - 3111920
Alignment:
Q  83 tgtacataagtaaactgaattcacactaacctct 116  Q
    ||||||||||||||||||||| ||||||||||||    
T  3111887 tgtacataagtaaactgaatttacactaacctct 3111920  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 222 - 251
Target Start/End: Original strand, 27418858 - 27418887
Alignment:
Q  222 tctaaattcacgtctaccttgtatgtagtc 251  Q
    ||||||||||||||||||||||||||||||    
T  27418858 tctaaattcacgtctaccttgtatgtagtc 27418887  T

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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 239
Target Start/End: Complemental strand, 17137406 - 17137226
Alignment:
Q  64 taacctttcatagtgtaattgtacataa-gtaaactgaattcacactaacctctt-gtatata--taaacttaatttacacaaacctctca-agtgagta 158  Q
    |||||| |||||||||||||||||| || ||| |  || || ||||||||||||| |||||||  |||||||||||||||| ||| ||||| ||||||||    
T  17137406 taacctctcatagtgtaattgtacaaaacgtagatcgactttacactaacctctttgtatataagtaaacttaatttacactaacgtctcacagtgagta 17137307  T
Q  159 atagtgcctacgtaaaatcaaattacgtttacatcaataattgatatgtaatcttaaataacgtctaaattcacgtctacc 239  Q
    |||||| | ||||||| ||||||||||||||| | |||||| |||| |||||| ||||||||||| |||||||| ||||||    
T  17137306 atagtgtccacgtaaagtcaaattacgtttacctaaataatagataagtaatcataaataacgtcaaaattcacatctacc 17137226  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 28225952 - 28225990
Alignment:
Q  89 taagtaaactgaattcacactaacctcttgtatatataa 127  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  28225952 taagtaaactgaatttacactaacctcttgtatacataa 28225990  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 11335335 - 11335368
Alignment:
Q  89 taagtaaactgaattcacactaacctcttgtata 122  Q
    ||||||||||||||| ||||||||||||||||||    
T  11335335 taagtaaactgaatttacactaacctcttgtata 11335368  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 11493355 - 11493388
Alignment:
Q  89 taagtaaactgaattcacactaacctcttgtata 122  Q
    ||||||||||||||| ||||||||||||||||||    
T  11493355 taagtaaactgaatttacactaacctcttgtata 11493388  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 15907764 - 15907723
Alignment:
Q  81 attgtacataagtaaactgaattcacactaacctcttgtata 122  Q
    |||| |||||||||||||||||| ||||||||||||| ||||    
T  15907764 attgaacataagtaaactgaatttacactaacctcttatata 15907723  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 18605184 - 18605151
Alignment:
Q  83 tgtacataagtaaactgaattcacactaacctct 116  Q
    ||||||||||||||||||||| ||||||||||||    
T  18605184 tgtacataagtaaactgaatttacactaacctct 18605151  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 18605562 - 18605526
Alignment:
Q  81 attgtacataagtaaactgaattcacactaacctctt 117  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  18605562 attgaacataagtaaactaaattcacactaacctctt 18605526  T

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Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 120 - 219
Target Start/End: Complemental strand, 13174669 - 13174569
Alignment:
Q  120 atatataaacttaatttacacaaacctctcaa-gtgagtaatagtgcctacgtaaaatcaaattacgtttacatcaataattgatatgtaatcttaaata 218  Q
    |||| |||||| ||||||||  |||||||||| |||||||||||| | |||||||||||||||||||||||| | ||||||||||| |||||||||||||    
T  13174669 atatgtaaactgaatttacattaacctctcaaagtgagtaatagtacttacgtaaaatcaaattacgtttaccttaataattgatacgtaatcttaaata 13174570  T
Q  219 a 219  Q
    |    
T  13174569 a 13174569  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 5458929 - 5458887
Alignment:
Q  80 aattgtacataagtaaactgaattcacactaacctcttgtata 122  Q
    ||||| |||||||||||||||||||||||||||||||| ||||    
T  5458929 aattgaacataagtaaactgaattcacactaacctcttatata 5458887  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 8781957 - 8781999
Alignment:
Q  80 aattgtacataagtaaactgaattcacactaacctcttgtata 122  Q
    ||||| |||||||||||||||||||||||||||||||| ||||    
T  8781957 aattgaacataagtaaactgaattcacactaacctcttatata 8781999  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 8782373 - 8782436
Alignment:
Q  80 aattgtacataagtaaactgaattcacactaacctcttgtatata----taaacttaatttaca 139  Q
    ||||| |||||||||||||||||| ||||||||||||| ||||||    |||||||||||||||    
T  8782373 aattgaacataagtaaactgaattgacactaacctcttatatatacacgtaaacttaatttaca 8782436  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 3390250 - 3390292
Alignment:
Q  80 aattgtacataagtaaactgaattcacactaacctcttgtata 122  Q
    ||||| |||||||||||||||||| ||||||||||||| ||||    
T  3390250 aattgaacataagtaaactgaatttacactaacctcttatata 3390292  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 33569732 - 33569774
Alignment:
Q  80 aattgtacataagtaaactgaattcacactaacctcttgtata 122  Q
    ||||| |||||||||||||||||| ||||||||||||| ||||    
T  33569732 aattgaacataagtaaactgaattgacactaacctcttatata 33569774  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 11381097 - 11381139
Alignment:
Q  80 aattgtacataagtaaactgaattcacactaacctcttgtata 122  Q
    ||||| |||||||||||||||||||||||||||||||| ||||    
T  11381097 aattgaacataagtaaactgaattcacactaacctcttatata 11381139  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 122
Target Start/End: Complemental strand, 11309637 - 11309603
Alignment:
Q  88 ataagtaaactgaattcacactaacctcttgtata 122  Q
    |||||||||||||||||||||||||||||| ||||    
T  11309637 ataagtaaactgaattcacactaacctcttatata 11309603  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 11381518 - 11381560
Alignment:
Q  80 aattgtacataagtaaactgaattcacactaacctcttgtata 122  Q
    ||||| |||||||||||||||||| ||||||||||||| ||||    
T  11381518 aattgaacataagtaaactgaattgacactaacctcttatata 11381560  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 36224701 - 36224738
Alignment:
Q  89 taagtaaactgaattcacactaacctcttgtatatata 126  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  36224701 taagtaaactgaatttacactaacctcttttatatata 36224738  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 22169606 - 22169547
Alignment:
Q  89 taagtaaactgaattcacactaacctcttgtat--atataaacttaatttacacaaacct 146  Q
    ||||||||||||||| ||||||||||||| |||  || |||||| ||||||||| |||||    
T  22169606 taagtaaactgaatttacactaacctcttatatacatgtaaactgaatttacactaacct 22169547  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 36308598 - 36308657
Alignment:
Q  91 agtaaactgaattcacactaacctcttgtat--atataaacttaatttacacaaacctct 148  Q
    ||||||||||||| ||||||||||||| |||  || |||||| ||||||||| |||||||    
T  36308598 agtaaactgaatttacactaacctcttatatacatgtaaactgaatttacactaacctct 36308657  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 28470152 - 28470115
Alignment:
Q  89 taagtaaactgaattcacactaacctcttgtatatata 126  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  28470152 taagtaaactgaatttacactaacctcttatatatata 28470115  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 29863185 - 29863222
Alignment:
Q  89 taagtaaactgaattcacactaacctcttgtatatata 126  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  29863185 taagtaaactgaatttacactaacctcttatatatata 29863222  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 4049962 - 4049917
Alignment:
Q  81 attgtacataagtaaactgaattcacactaacctcttgtatatata 126  Q
    |||| |||||||||||||||||| |||||||| |||| ||||||||    
T  4049962 attgaacataagtaaactgaatttacactaacatcttatatatata 4049917  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 41113712 - 41113771
Alignment:
Q  89 taagtaaactgaattcacactaacctcttgtat--atataaacttaatttacacaaacct 146  Q
    ||||||||||||||| ||||||||||||| |||  || |||||| ||||||||| |||||    
T  41113712 taagtaaactgaatttacactaacctcttatatacatgtaaactgaatttacactaacct 41113771  T

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