View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6534_low_3 (Length: 579)
Name: NF6534_low_3
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6534_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 122 - 570
Target Start/End: Complemental strand, 8446453 - 8446003
Alignment:
| Q |
122 |
ttgataaactctagaagaattatttctatgttggtggctcgatgaaggaaatagatcaaagtgaaagtgattgttgttcagtttgtttaagccaaatgtg |
221 |
Q |
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| T |
8446453 |
ttgataaactctacaagaattatttctatgttggtggctcaatgaaggaaatagatcaaagtgaaagtgattgttgttcagtttgtttaagccaaatgtg |
8446354 |
T |
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| Q |
222 |
tagaggggaaaaagttaaggtatcacctttatgtgatcatagatatcatgctgattgtattggtgcttggttgaagaacaatactacatgtccactttgt |
321 |
Q |
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| T |
8446353 |
tagaggggaaaaagttagggtattacctttatgtgatcatagatatcatgctgattgtattggtgcttggttgaagaacaataccacatgtccactttgt |
8446254 |
T |
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| Q |
322 |
agaagcaaaatcagtaaccatagttttaatctgaatctgcaaaaattggtgaatccttttgaagaatctttggttgaccttatacagagtttctctgatg |
421 |
Q |
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| T |
8446253 |
agaagcaaaatcagtaaccatagttataatctgaatctgcaaaaattggtgaatccttttgaagaatctttggttgaccttatacagagtttctctgatg |
8446154 |
T |
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| Q |
422 |
cacttgtaactattctttataagatacttcaatctagtatcactgagtctgagggtttccatgttgtttattgatgcttttttattcacaacttcaaata |
521 |
Q |
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| T |
8446153 |
cacttgtaactattctttataagatacttcaatctagtatcaccgagtctgagggtttccatgttgtttattgatgcttttttattcacaacttcaaata |
8446054 |
T |
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| Q |
522 |
--gtttgtatgtaagttatgtatgtaatatgcatatgtttatcagaattat |
570 |
Q |
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| T |
8446053 |
gtgtttgtatgtaagttatgtatgtaatatgcatatgtttatcagaattat |
8446003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 8446546 - 8446481
Alignment:
| Q |
16 |
aaaaaccaaacatgacaagaacaaccatcctcaaattcctcacaatagttgctcttatagcttatt |
81 |
Q |
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| T |
8446546 |
aaaaaccaaacatgacaagaacaaccatcctcaaattcctcacaatagttgctcttatagcttatt |
8446481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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