View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6534_low_30 (Length: 239)

Name: NF6534_low_30
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6534_low_30
NF6534_low_30
[»] chr5 (4 HSPs)
chr5 (21-239)||(24912239-24912454)
chr5 (83-215)||(24900027-24900159)
chr5 (86-202)||(24988957-24989073)
chr5 (21-60)||(24988920-24988959)
[»] scaffold0099 (2 HSPs)
scaffold0099 (86-198)||(25229-25342)
scaffold0099 (21-60)||(25192-25231)
[»] scaffold0018 (2 HSPs)
scaffold0018 (21-77)||(142946-143002)
scaffold0018 (157-213)||(142941-142997)


Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 24912239 - 24912454
Alignment:
Q  21 ttgtcgataatgtactggctgctcatgcttcatgaacaattaatgttacatactactattgtaaaaatgtttgtgcaatatattatgccgatacatttta 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  24912239 ttgtcgataatgtactggctgctcatgcttcatgaacaattaatgttacatactacgattgtaaaaatgtttgtacaatatattatgccgatacatttta 24912338  T
Q  121 agatattatgacaggtgtgtgattcatgttaagtaatgagcttgttgatatagttatggctgctcatgcttcattaacaagtcatgtttcataatgttgt 220  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||  |    
T  24912339 agatattatgacaggtgtgtgattcatgttaagtaatgaacttgttgatatggttatgg-tgctcatgcttcattaacaagtcatgtttcataatgt--t 24912435  T
Q  221 gtaaaaatttacctattac 239  Q
    ||||||||| |||||||||    
T  24912436 gtaaaaattaacctattac 24912454  T

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Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 83 - 215
Target Start/End: Original strand, 24900027 - 24900159
Alignment:
Q  83 aaaaatgtttgtgcaatatattatgccgatacattttaagatattatgacaggtgtgtgattcatgttaagtaatgagcttgttgatatagttatggctg 182  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24900027 aaaaatgtttgtacaatatattatgccaatacattttaagatattatgacaggtgtgtgattcatgttaagtaatgagcttgttgatatagttatggctg 24900126  T
Q  183 ctcatgcttcattaacaagtcatgtttcataat 215  Q
     ||||||||||||||||||||||||||||||||    
T  24900127 atcatgcttcattaacaagtcatgtttcataat 24900159  T

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Target: chr5; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 86 - 202
Target Start/End: Original strand, 24988957 - 24989073
Alignment:
Q  86 aatgtttgtgcaatatattatgccgatacattttaagatattatgacaggtgtgtgattcatgttaagtaatgagcttgttgatatagttatggctgctc 185  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  24988957 aatgtttgtacaatatattatgccgatacattttaagatattatgacaggtgtgtgattcatgttaagtaaagaacttgttgatatagttatggctgctc 24989056  T
Q  186 atgcttcattaacaagt 202  Q
    |||||||||||||||||    
T  24989057 atgcttcattaacaagt 24989073  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 24988920 - 24988959
Alignment:
Q  21 ttgtcgataatgtactggctgctcatgcttcatgaacaat 60  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  24988920 ttgttgataatgtactggctgctcatgcttcatgaacaat 24988959  T

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Target: scaffold0099 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 25229 - 25342
Alignment:
Q  86 aatgtttgtgcaatatattatgccgatacatttt-aagatattatgacaggtgtgtgattcatgttaagtaatgagcttgttgatatagttatggctgct 184  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  25229 aatgtttgtacaatatattatgccgatacatttttaagatattatgacaggtgtgtgattcatgttaagtaaagaacttgttgatatagttatggctgct 25328  T
Q  185 catgcttcattaac 198  Q
    ||||||||||||||    
T  25329 catgcttcattaac 25342  T

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Target: scaffold0099; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 25192 - 25231
Alignment:
Q  21 ttgtcgataatgtactggctgctcatgcttcatgaacaat 60  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  25192 ttgttgataatgtactggctgctcatgcttcatgaacaat 25231  T

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Target: scaffold0018 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 142946 - 143002
Alignment:
Q  21 ttgtcgataatgtactggctgctcatgcttcatgaacaattaatgttacatactact 77  Q
    |||| |||| |||||||||||||||||||||||||||| || ||||| |||||||||    
T  142946 ttgttgatagtgtactggctgctcatgcttcatgaacatttcatgtttcatactact 143002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 142941 - 142997
Alignment:
Q  157 tgagcttgttgatatagttatggctgctcatgcttcattaacaagtcatgtttcata 213  Q
    ||||||||||||||  ||  |||||||||||||||||| ||||  ||||||||||||    
T  142941 tgagcttgttgatagtgtactggctgctcatgcttcatgaacatttcatgtttcata 142997  T

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