View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6534_low_35 (Length: 213)
Name: NF6534_low_35
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6534_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 40360641 - 40360727
Alignment:
| Q |
110 |
cactgtccctttaatgtttccctcctctgttttggtctctgcctcaactttctcatttgaatcaaccactttctcttctcttagatc |
196 |
Q |
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| T |
40360641 |
cactgtcccttcaatatttccctcctctgttttggtctctgcctcaactttctcatttgaatcaaccactttctcttctcttagatc |
40360727 |
T |
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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 40360538 - 40360570
Alignment:
| Q |
10 |
catcatcactatcattatcatcattctctccag |
42 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
40360538 |
catcatcattatcattatcatcattctctccag |
40360570 |
T |
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