View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6534_low_6 (Length: 552)
Name: NF6534_low_6
Description: NF6534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6534_low_6 |
 | |
|
| [»] scaffold0113 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0113 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 250 - 535
Target Start/End: Original strand, 10094 - 10379
Alignment:
| Q |
250 |
ttagaaacggatttgtctaatgnnnnnnnnnngtttgcaatcacatttaacnnnnnnnntagagaaaaactcaatctagttaattgaaaataaacctagt |
349 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10094 |
ttagaaacggatttgtctaatgaaaaaaaaaagtttgcaatcacatttaacaaaaaaaatagagaaaaactcaatctagttaattgaaaataaacctagt |
10193 |
T |
|
| Q |
350 |
gatcctccaaacagatccactaccaatcaaaaattttgagttacttacttttgtaccaccatcaaagaaattaggttgacataatttagcatagatctct |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10194 |
gatcctccaaacagatccactaccaatcaagaattttgagttacttacttttgtaccaccatcaaagaaattaggttgacataatttagcatagatctct |
10293 |
T |
|
| Q |
450 |
ttcttggtcatagaacaaagtttttcttcaccaagaattttcttgagaagaaacttgtagcttggaggcaacttagattcccaaac |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10294 |
ttcttggtcatagaacaaagtttttcttcaccaagaattttcttgacaagaaacttgtagcttggaggcaacttagattcccaaac |
10379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 9859 - 9984
Alignment:
| Q |
13 |
aaaatttcctacaataatcaccacatataaacaaattaaaactttttcaatgcagtctaaaagcaaactttaaaaaattgtttgcaaccacaatccccag |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9859 |
aaaatttcctacaataatcaccacatataaacaaattaaaactttttcaatgcagtctaaaagcaaactttaaaaaattgtttgcaaccacgatccccag |
9958 |
T |
|
| Q |
113 |
caataagcttttttatatgcataatatc |
140 |
Q |
| |
|
||||||||||||| ||||||||||||| |
|
|
| T |
9959 |
caataagcttttt--tatgcataatatc |
9984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 532
Target Start/End: Complemental strand, 45798920 - 45798775
Alignment:
| Q |
387 |
gagttacttacttttgtaccaccatcaaagaaattaggttgacataatttagcatagatctctttcttggtcatagaacaaagtttttcttcaccaagaa |
486 |
Q |
| |
|
|||| ||||||||| |||||||| |||||| |||||||||||||| ||| | |||| |||||||| |||||| |||| |||||||||||||||| |
|
|
| T |
45798920 |
gagtaacttactttggtaccaccgtcaaagcgattaggttgacatagttttgtgtagacatctttcttactcatagtggaaagattttcttcaccaagaa |
45798821 |
T |
|
| Q |
487 |
ttttcttgagaagaaacttgtagcttggaggcaacttagattccca |
532 |
Q |
| |
|
||| || |||||||||||||| || || ||||| |||||||| |
|
|
| T |
45798820 |
atttattagcaagaaacttgtagcatgatggtaactttgattccca |
45798775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University