View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6535_high_1 (Length: 634)

Name: NF6535_high_1
Description: NF6535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6535_high_1
NF6535_high_1
[»] scaffold0186 (1 HSPs)
scaffold0186 (52-494)||(25038-25479)
[»] scaffold0217 (3 HSPs)
scaffold0217 (536-622)||(20319-20405)
scaffold0217 (575-622)||(19540-19587)
scaffold0217 (536-570)||(853-887)
[»] chr5 (16 HSPs)
chr5 (536-622)||(15525202-15525288)
chr5 (536-622)||(8525536-8525622)
chr5 (536-622)||(34858520-34858606)
chr5 (536-622)||(3034869-3034955)
chr5 (536-622)||(5100479-5100565)
chr5 (536-622)||(5101230-5101316)
chr5 (537-622)||(29640198-29640282)
chr5 (536-622)||(37250420-37250506)
chr5 (538-622)||(29639576-29639660)
chr5 (536-622)||(15526024-15526108)
chr5 (536-622)||(8524726-8524812)
chr5 (536-596)||(34859376-34859436)
chr5 (537-606)||(29390729-29390798)
chr5 (537-596)||(3035679-3035738)
chr5 (576-620)||(37251228-37251272)
chr5 (536-580)||(37252535-37252579)
[»] chr2 (14 HSPs)
chr2 (536-622)||(6321184-6321270)
chr2 (536-622)||(14453948-14454034)
chr2 (536-622)||(39160096-39160182)
chr2 (536-622)||(39209012-39209098)
chr2 (536-622)||(33180624-33180710)
chr2 (536-622)||(36601848-36601934)
chr2 (536-620)||(18247555-18247639)
chr2 (536-622)||(33179802-33179888)
chr2 (536-622)||(6320372-6320458)
chr2 (536-622)||(14453133-14453219)
chr2 (536-618)||(18248398-18248480)
chr2 (539-622)||(21191580-21191663)
chr2 (584-622)||(40495109-40495147)
chr2 (585-623)||(40494865-40494903)
[»] chr7 (19 HSPs)
chr7 (536-620)||(595311-595395)
chr7 (536-622)||(1600477-1600563)
chr7 (536-622)||(1599658-1599744)
chr7 (537-622)||(38229518-38229603)
chr7 (536-620)||(38226277-38226361)
chr7 (536-622)||(33981435-33981521)
chr7 (536-622)||(46159695-46159781)
chr7 (536-610)||(33980620-33980694)
chr7 (536-622)||(43543238-43543324)
chr7 (536-614)||(47254498-47254576)
chr7 (536-610)||(585047-585121)
chr7 (536-622)||(42832038-42832124)
chr7 (537-614)||(41407915-41407992)
chr7 (539-622)||(19064165-19064248)
chr7 (536-593)||(47253693-47253750)
chr7 (536-596)||(41407826-41407886)
chr7 (536-592)||(43544077-43544133)
chr7 (572-622)||(42832862-42832912)
chr7 (536-622)||(46160506-46160594)
[»] chr8 (12 HSPs)
chr8 (536-622)||(35021148-35021234)
chr8 (536-622)||(38363551-38363637)
chr8 (536-620)||(41670449-41670533)
chr8 (536-622)||(31640357-31640443)
chr8 (536-622)||(38362735-38362821)
chr8 (538-622)||(26951041-26951125)
chr8 (536-622)||(19142043-19142129)
chr8 (536-622)||(26920323-26920409)
chr8 (537-622)||(41671224-41671309)
chr8 (536-622)||(35021964-35022050)
chr8 (560-622)||(26950253-26950315)
chr8 (576-622)||(31641182-31641228)
[»] chr6 (8 HSPs)
chr6 (536-622)||(13868187-13868273)
chr6 (536-623)||(24160179-24160266)
chr6 (539-622)||(13868979-13869062)
chr6 (536-622)||(15509073-15509159)
chr6 (572-622)||(12503662-12503712)
chr6 (536-622)||(32561570-32561649)
chr6 (538-596)||(32560773-32560831)
chr6 (588-620)||(8637625-8637657)
[»] chr4 (19 HSPs)
chr4 (536-622)||(10657019-10657105)
chr4 (536-622)||(10871164-10871250)
chr4 (536-622)||(43939260-43939346)
chr4 (536-622)||(43938443-43938529)
chr4 (536-622)||(50791601-50791687)
chr4 (536-622)||(51942616-51942702)
chr4 (537-622)||(49647702-49647787)
chr4 (538-622)||(8079616-8079700)
chr4 (536-622)||(8080939-8081025)
chr4 (539-622)||(49646901-49646984)
chr4 (536-622)||(31623417-31623503)
chr4 (538-622)||(10657835-10657919)
chr4 (538-622)||(10871980-10872064)
chr4 (536-620)||(26919178-26919262)
chr4 (541-622)||(26918378-26918459)
chr4 (536-622)||(30112907-30112993)
chr4 (536-616)||(51943432-51943511)
chr4 (536-596)||(7111796-7111856)
chr4 (582-622)||(43590656-43590696)
[»] chr3 (19 HSPs)
chr3 (536-622)||(39130892-39130978)
chr3 (536-622)||(43861550-43861636)
chr3 (536-622)||(50937417-50937503)
chr3 (536-622)||(42878652-42878738)
chr3 (536-622)||(48073683-48073769)
chr3 (536-622)||(42879463-42879549)
chr3 (536-622)||(43358488-43358575)
chr3 (536-622)||(2228384-2228470)
chr3 (536-622)||(22979684-22979770)
chr3 (536-622)||(39131700-39131786)
chr3 (536-622)||(48072883-48072969)
chr3 (536-622)||(50936604-50936690)
chr3 (542-622)||(42165017-42165097)
chr3 (536-622)||(22978868-22978954)
chr3 (536-622)||(36465877-36465962)
chr3 (536-622)||(7042571-7042654)
chr3 (538-622)||(43862339-43862423)
chr3 (536-622)||(42164205-42164291)
chr3 (536-622)||(36471561-36471642)
[»] scaffold0014 (2 HSPs)
scaffold0014 (536-622)||(69730-69816)
scaffold0014 (537-622)||(70657-70742)
[»] chr1 (4 HSPs)
chr1 (536-622)||(23260110-23260196)
chr1 (539-622)||(4639228-4639311)
chr1 (537-622)||(23260786-23260869)
chr1 (582-622)||(43847366-43847406)


Alignment Details
Target: scaffold0186 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 52 - 494
Target Start/End: Complemental strand, 25479 - 25038
Alignment:
Q  52 tcttgcacgacctttaagttgagtgcagactt-atgcttggtggtattcatgatgtgacgcatggattacctctctttcattctccatttcgagattctt 150  Q
    ||||||||||||||||||||||||||||  || ||||||| |||||||||  |||| |||||||||||||| ||||||||||||||||||| ||||||||    
T  25479 tcttgcacgacctttaagttgagtgcaggattgatgcttgatggtattcaatatgtaacgcatggattaccactctttcattctccatttcaagattctt 25380  T
Q  151 catctgaacatcagttggttcacttgaattttctgacaaaagtaaaaattccttcatttcttttactaatatacatacaattgttaagaaattttagagt 250  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    |||||||| ||||||||||||    
T  25379 catctgaacataagttagttcacttgaattttctgacaaaagtaaaaattctttcatttcttttagtaatataca----attgttaataaattttagagt 25284  T
Q  251 tttgtgagcttgtacccaagacttgaatcagagttgtcagcacttgattgtcaaaaaattagttagcatcacaaacacata--aaatgtaagtggcaatc 348  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||  |||||||||||| ||||    
T  25283 tttgtgagcttgtacccaagacttgaatcagagttgtcaacatttgattgtcataaaattagttagcatcacaaacacatataaaatgtaagtggaaatc 25184  T
Q  349 aagaaaaagaataataaaggctcgtaaaataaggtgaaatctccttgataattggtgcttgaaattcaatttcagctagagtttcaacaaactttccaat 448  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||     
T  25183 aagaaaatgaataataaaggctcgtaaaatatggtgaaatctccttgataattggtgcttgaaattcaatttcagctagagtttcaacaagctgtccaac 25084  T
Q  449 taggagatgtgagttgtaaggtatttggagaaaataaagagcaaaa 494  Q
    ||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  25083 taggagatgggagttgtaacgtatttggagaaaataaagagtaaaa 25038  T

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Target: scaffold0217 (Bit Score: 83; Significance: 5e-39; HSPs: 3)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 20405 - 20319
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20405 cgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 20319  T

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Target: scaffold0217; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 575 - 622
Target Start/End: Original strand, 19540 - 19587
Alignment:
Q  575 cataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||    
T  19540 cataacgtgcaatttcctcttcatttttcttcccatcttgattgttca 19587  T

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Target: scaffold0217; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 536 - 570
Target Start/End: Complemental strand, 887 - 853
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaa 570  Q
    |||||||||||||||||||||||||||||||||||    
T  887 cgttcataaattttgttccattccaaaacctagaa 853  T

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Target: chr5 (Bit Score: 83; Significance: 5e-39; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 15525202 - 15525288
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15525202 cgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 15525288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 8525622 - 8525536
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8525622 cgttcataaattttgttccattccaaaacctagagtacacataacgtgcaatttcttcttcattcttcttctcatcttgattgttca 8525536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 34858520 - 34858606
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34858520 cgttcataaattttgtttcattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 34858606  T

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Target: chr5; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 3034869 - 3034955
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3034869 cgttcataaattttattccattccaaaacctaaaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 3034955  T

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Target: chr5; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 5100479 - 5100565
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  5100479 cgttcataaattttgttacattccaaaacctagaacacacataatgtgcaatttcttcttcatttttcttcccatcttgattgttca 5100565  T

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Target: chr5; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 5101316 - 5101230
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||| ||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5101316 cgttcataaaatttgttccattccaaaatctagaacacacataatgtgcaatttcttcttcattcttcttcccatcttgattgttca 5101230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 537 - 622
Target Start/End: Complemental strand, 29640282 - 29640198
Alignment:
Q  537 gttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  29640282 gttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttc-ttattcttcccatcttgattgttca 29640198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 37250420 - 37250506
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||| |||||||||| |||||||||||    
T  37250420 cgttcataaattttgttccattccaaaacctagaacacgcataacgtgcaatttcctcttcatttttcttcccattttgattgttca 37250506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 538 - 622
Target Start/End: Original strand, 29639576 - 29639660
Alignment:
Q  538 ttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||||||||| |||||||||||||| |||  ||||||||||||||||||||||||||||||||||| ||||||||||    
T  29639576 ttcataaattttgttccactccaaaacctagaacacatgtaacgtgcaatttcttcttcattcttcttcccatcatgattgttca 29639660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 15526108 - 15526024
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||||| | |||  |||||||||||||||||||||||||||  |||||||||||||||    
T  15526108 cgttcataaattttgttccattccaaaacctagaacataca--acgtgcaatttcttcttcattcttcttttcatcttgattgttca 15526024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 8524726 - 8524812
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||| |||||||||||||| || || |||||| ||||||||||||||||||||||||| |||||||| ||||||    
T  8524726 cgttcataaattttgtttcattccaaaacctataacacgcataacttgcaatttcttcttcattcttcttctcatcttgactgttca 8524812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 536 - 596
Target Start/End: Complemental strand, 34859436 - 34859376
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttc 596  Q
    |||||||||||||||||| |||||||||||||||| |||  ||||||||||||||||||||    
T  34859436 cgttcataaattttgttctattccaaaacctagaacacatgtaacgtgcaatttcttcttc 34859376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 537 - 606
Target Start/End: Complemental strand, 29390798 - 29390729
Alignment:
Q  537 gttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttc 606  Q
    ||||||||||||||||||| |||| ||||||||| | ||||||| || | ||||||||||||||||||||    
T  29390798 gttcataaattttgttccagtccataacctagaacagacataacctgtagtttcttcttcattcttcttc 29390729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 537 - 596
Target Start/End: Complemental strand, 3035738 - 3035679
Alignment:
Q  537 gttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttc 596  Q
    ||||||| ||||||||||||||||||||||| || ||| |||| ||||||||||||||||    
T  3035738 gttcatacattttgttccattccaaaacctataacacatataatgtgcaatttcttcttc 3035679  T

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Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 576 - 620
Target Start/End: Complemental strand, 37251272 - 37251228
Alignment:
Q  576 ataacgtgcaatttcttcttcattcttcttcccatcttgattgtt 620  Q
    ||||||||||| || ||||||||||||||||||||||||||||||    
T  37251272 ataacgtgcaacttattcttcattcttcttcccatcttgattgtt 37251228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 536 - 580
Target Start/End: Complemental strand, 37252579 - 37252535
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataac 580  Q
    |||||||||||||||||| ||| |||||||||||| |||||||||    
T  37252579 cgttcataaattttgttcaatttcaaaacctagaacacacataac 37252535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 5e-39; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 6321270 - 6321184
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6321270 cgttcataaattttgttccattccaaaacatagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 6321184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 14454034 - 14453948
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14454034 cgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 14453948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 39160096 - 39160182
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39160096 cgttcataaattttgttccattccaaaacctagaacacacataacgtacaatttcttcttcattcttcttcccatcttgattgttca 39160182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 39209098 - 39209012
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39209098 cgttcataaattttgttccattccaaaacctagaacacacataacgtacaatttcttcttcattcttcttcccatcttgattgttca 39209012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 33180710 - 33180624
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33180710 cgttcataaattttgttccattctaaaatctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 33180624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 36601934 - 36601848
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36601934 cgttcataaattttgttctatttcaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 36601848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 536 - 620
Target Start/End: Original strand, 18247555 - 18247639
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgtt 620  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||    
T  18247555 cgttcataaattttgttccattccaaaacctagaacaaacataacgtgcaatttcatcttcattcttcttcccatcttgattgtt 18247639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 33179802 - 33179888
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33179802 cgttcataaaattttttccattccaaaacctagaacacacataacgtgcaatttctttttcattcttcttcccatcttgattgttca 33179888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 6320372 - 6320458
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  6320372 cgttcataaattttgttccattctaaaacctataacacacataacgtgcaatttcttcttcattctttttcccatctttattgttca 6320458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 14453133 - 14453219
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||  ||||||||  ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14453133 cgttcataaattttgttcagttccaaaatatagaacatacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 14453219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 536 - 618
Target Start/End: Complemental strand, 18248480 - 18248398
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattg 618  Q
    ||||||||||||||||| |||||||||||||||||  || |||||| ||||||||||||||||||||||||||||||||||||    
T  18248480 cgttcataaattttgtttcattccaaaacctagaacgcaaataacgcgcaatttcttcttcattcttcttcccatcttgattg 18248398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 539 - 622
Target Start/End: Complemental strand, 21191663 - 21191580
Alignment:
Q  539 tcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||| |||||||||||||||||| || | ||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  21191663 tcataaatttggttccattccaaaacctaaaacagacataacctgcagtttcttcttcattcttcttcccatcttgattgttca 21191580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 584 - 622
Target Start/End: Complemental strand, 40495147 - 40495109
Alignment:
Q  584 caatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  40495147 caatttcttcttcattcttcttcccattttgattgttca 40495109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 585 - 623
Target Start/End: Original strand, 40494865 - 40494903
Alignment:
Q  585 aatttcttcttcattcttcttcccatcttgattgttcat 623  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  40494865 aatttcttcttcattcttcttctcattttgattgttcat 40494903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 8e-38; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 536 - 620
Target Start/End: Complemental strand, 595395 - 595311
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgtt 620  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  595395 cgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgtt 595311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 1600563 - 1600477
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1600563 cgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttattcccatcttgattgttca 1600477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 1599658 - 1599744
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  1599658 cgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttttcatcttgattgttca 1599744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 537 - 622
Target Start/End: Complemental strand, 38229603 - 38229518
Alignment:
Q  537 gttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38229603 gttcataaattttgttccattgcaaaacctagaacatacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 38229518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 536 - 620
Target Start/End: Original strand, 38226277 - 38226361
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgtt 620  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||    
T  38226277 cgttcataaattttgttccattccaaaacctagaacacgcataacgtgcaatttcttcttcattcttctttccatcttgattgtt 38226361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 33981521 - 33981435
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  33981521 cgttcataaattttgttccattccaaaacctagaacacacataacgtgtaatttcttcttcattcttctttccatcttgattcttca 33981435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 46159695 - 46159781
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46159695 cgttcataaattttgttccattcctaaacctagaacgcacataacgtgcaatttcttcttcattcttcttctcatcttgattgttca 46159781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 536 - 610
Target Start/End: Original strand, 33980620 - 33980694
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccat 610  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  33980620 cgttcataaattttgttccattccaaaacctagaactcacataacgtgcaatttcttcttcattcttcttcccat 33980694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 43543238 - 43543324
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  43543238 cgttcataaattttgttcccttccaaaacctaggacacacataacgtgcaatttcttcttcattcttcttctcattttgattgttca 43543324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 536 - 614
Target Start/End: Complemental strand, 47254576 - 47254498
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttg 614  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  47254576 cgttcataaattttgttacattccaaaacctagaacacacataacgtgcaatttcttcttcatttttcttcccatcttg 47254498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 536 - 610
Target Start/End: Complemental strand, 585121 - 585047
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccat 610  Q
    ||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  585121 cgttcataaattttgttccattccaaaacctagaacatacataacatgcaatttcttcttcattcttcttcccat 585047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 42832038 - 42832124
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||| || | |||||||||||||||||    
T  42832038 cgttcataaattttgttccattctaaaatctagaacacacataacgtgcaatttcttcttcatttttttacccatcttgattgttca 42832124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 537 - 614
Target Start/End: Complemental strand, 41407992 - 41407915
Alignment:
Q  537 gttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttg 614  Q
    |||||||||||||||||||||  ||||||||||| |||  ||||||||||||||||||||||||||||||||||||||    
T  41407992 gttcataaattttgttccattaaaaaacctagaacacatgtaacgtgcaatttcttcttcattcttcttcccatcttg 41407915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 539 - 622
Target Start/End: Original strand, 19064165 - 19064248
Alignment:
Q  539 tcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||  ||||||||||||||||| || | ||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  19064165 tcataaatttgattccattccaaaacctaaaacagacataacctgcagtttcttcttcattcttcttcccatcttgattgttca 19064248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 536 - 593
Target Start/End: Original strand, 47253693 - 47253750
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttc 593  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  47253693 cgttcataaaatttgttccattccaaaacctagaacacacataacgtgcaatttcttc 47253750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 536 - 596
Target Start/End: Original strand, 41407826 - 41407886
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttc 596  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  41407826 cgttcatagattttgttccattccaaaatctagaacacacataacgtgcaatttcttcttc 41407886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 536 - 592
Target Start/End: Complemental strand, 43544133 - 43544077
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttctt 592  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  43544133 cgttcataaattttgttccattccaaaacctataacacacataacgtgcaatttctt 43544077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 572 - 622
Target Start/End: Complemental strand, 42832912 - 42832862
Alignment:
Q  572 acacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42832912 acacataacgtgcaatttcttcttcattcttctccccatcttgattgttca 42832862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 46160594 - 46160506
Alignment:
Q  536 cgttcataaattttgttccattccaaaa---cctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||   |  | || |||||||| ||||||||||||||||| ||||||| ||||||||||||||||    
T  46160594 cgttcataaattttgttccattccaaaattactaaaaacacacataatgtgcaatttcttcttcactcttctt-ccatcttgattgttca 46160506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 35021148 - 35021234
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35021148 cgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttctttccatcttgattgttca 35021234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 38363637 - 38363551
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38363637 cgttcataaattttgttccattccaaaacctagaacacacacaacgtgcaatttcttcttcattcttcttcccatcttgattgttca 38363551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 536 - 620
Target Start/End: Original strand, 41670449 - 41670533
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgtt 620  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41670449 cgttcataaaatttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgtt 41670533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 31640357 - 31640443
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31640357 cgttcatatattttgttccattccaaaacctagaacacacataacgtgtaatttcttcttcattcttcttcccatcttgattgttca 31640443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 38362735 - 38362821
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38362735 cgttcataaattttgttgcatttcaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 38362821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 538 - 622
Target Start/End: Complemental strand, 26951125 - 26951041
Alignment:
Q  538 ttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26951125 ttcataaattttattccattccaaaatctataatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 26951041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 19142129 - 19142043
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||||||||| |||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  19142129 cgttcataaattttgttctattccaaaacctagaacacacataacatgcaatttattcttcattcttcttcccatcttgattgttca 19142043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 26920409 - 26920323
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||||| ||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  26920409 cgttcataaattttattccattccaaaacctaaaacacacataacatgcaatttcttcttcattcttcttcccatattgattgttca 26920323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 537 - 622
Target Start/End: Complemental strand, 41671309 - 41671224
Alignment:
Q  537 gttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||||||| |||||||||||||| || |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  41671309 gttcataaattttgttacattccaaaacctaaaacacacataacgtgtaatttcttcttcatttttcttcccatcttgattgttca 41671224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 35022050 - 35021964
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||||||||||||||||||| |||||| ||| |||| ||||||||||||||| ||||||||| ||||||||||||||||    
T  35022050 cgttcataaattttgttccattccaaaatctagaacacatataatgtgcaatttcttctttattcttctttccatcttgattgttca 35021964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 560 - 622
Target Start/End: Original strand, 26950253 - 26950315
Alignment:
Q  560 aaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26950253 aaaacctataacacacataacgtgcaaattcttcttcattcttcttcccatcttgattgttca 26950315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 576 - 622
Target Start/End: Complemental strand, 31641228 - 31641182
Alignment:
Q  576 ataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||| ||||||||||||||||||||| || ||||||||||||||||    
T  31641228 ataacatgcaatttcttcttcattcttttttccatcttgattgttca 31641182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 13868187 - 13868273
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13868187 cgttcataaattttgttccattccaaaacctaaaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 13868273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 536 - 623
Target Start/End: Original strand, 24160179 - 24160266
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttcat 623  Q
    ||||||||||||||||||| |||||||| |||||| |||||||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  24160179 cgttcataaattttgttcccttccaaaatctagaacacacataacgtgaaatttattcttcattcttcttctcatcttgattgttcat 24160266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 539 - 622
Target Start/End: Complemental strand, 13869062 - 13868979
Alignment:
Q  539 tcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    |||||||||||||    
T  13869062 tcataaattttgttccattccaaaacctagaacacacataacatgcaatttcttcttcattcttctttttgtcttgattgttca 13868979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 15509073 - 15509159
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||| |||||||||||||||||||||||||||||| |||||| || | |||||||||||||  ||||||||| ||||||||||||||    
T  15509073 cgttaataaattttgttccattccaaaacctagaacacacatgacattcaatttcttcttcggtcttcttcctatcttgattgttca 15509159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 572 - 622
Target Start/End: Original strand, 12503662 - 12503712
Alignment:
Q  572 acacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12503662 acacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 12503712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 32561649 - 32561570
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||  |||||||||||||| |       ||||||||||||||||||||||||||||||| ||||||||||||||    
T  32561649 cgttcataaattttgtgtcattccaaaacctaaa-------taacgtgcaatttcttcttcattcttcttccgatcttgattgttca 32561570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 538 - 596
Target Start/End: Original strand, 32560773 - 32560831
Alignment:
Q  538 ttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttc 596  Q
    ||||||| ||||||||||||||||||||||||  ||||||||| | |||||||||||||    
T  32560773 ttcataatttttgttccattccaaaacctagagcacacataacatacaatttcttcttc 32560831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 588 - 620
Target Start/End: Complemental strand, 8637657 - 8637625
Alignment:
Q  588 ttcttcttcattcttcttcccatcttgattgtt 620  Q
    ||||||||||||||||||||||| |||||||||    
T  8637657 ttcttcttcattcttcttcccattttgattgtt 8637625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 10657019 - 10657105
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10657019 cgttcataaattttgttccattccaaaacctagaacacacataacgtacaatttcttcttcattcttcttcccatcttgattgttca 10657105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 10871164 - 10871250
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10871164 cgttcataaattttgttccattccaaaacctagaacacacataacgtacaatttcttcttcattcttcttcccatcttgattgttca 10871250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 43939346 - 43939260
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43939346 cgttcataaattttgttctattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 43939260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 43938443 - 43938529
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43938443 cgttcataaattttgttccattccaaaacctaaaacacacataacgtgcaatttcttgttcattcttcttcccatcttgattgttca 43938529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 50791687 - 50791601
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50791687 cgttcataaattttgttccattctaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcctatcttgattgttca 50791601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 51942616 - 51942702
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51942616 cgttcataaaatttgttccattccaaaacctagaacacacataacatgcaatttcttcttcattcttcttcccatcttgattgttca 51942702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 537 - 622
Target Start/End: Complemental strand, 49647787 - 49647702
Alignment:
Q  537 gttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49647787 gttcataaattttgttcaattccaaaacctagaacacgcataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 49647702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 538 - 622
Target Start/End: Original strand, 8079616 - 8079700
Alignment:
Q  538 ttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8079616 ttcataaattttgtttcattccaaaacctagaacacacataacgtgcaatttcttcttcatttttcttcccatcttgattgttca 8079700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 8081025 - 8080939
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  8081025 cgttcataaattttgtttcattccaaaacctagaacacaaataacgtgcaatttcttcttcattcttctttccatcttgattgttca 8080939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 539 - 622
Target Start/End: Original strand, 49646901 - 49646984
Alignment:
Q  539 tcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  49646901 tcataaattttgttcaattccaaaacctagaacacacataacgtgcaatttcttcttcattattcttcccatcttggttgttca 49646984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 31623417 - 31623503
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||| ||||||||    
T  31623417 cgtttataaattttgttccattccaaaacctagaacacacataacatgcaattttttcttcattcttcttcccatcttaattgttca 31623503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 538 - 622
Target Start/End: Complemental strand, 10657919 - 10657835
Alignment:
Q  538 ttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||  ||||||||    
T  10657919 ttcataaattttgttccattccaaaacctagaacacacacaacttgcaatttcttcttcattcttcttcccatctacattgttca 10657835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 538 - 622
Target Start/End: Complemental strand, 10872064 - 10871980
Alignment:
Q  538 ttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||  ||||||||    
T  10872064 ttcataaattttgttccattccaaaacctagaacacacacaacttgcaatttcttcttcattcttcttcccatctacattgttca 10871980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 536 - 620
Target Start/End: Complemental strand, 26919262 - 26919178
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgtt 620  Q
    |||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||| ||||||||||||| ||||||    
T  26919262 cgttcataaattttgttccactccaaaacctagaacaaacataacgtgcaatttcttcttcattattcttcccatctttattgtt 26919178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 541 - 622
Target Start/End: Original strand, 26918378 - 26918459
Alignment:
Q  541 ataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||| || |||| |||| ||||||||||||||||||||||||| |||||||||||||||    
T  26918378 ataaattttgttccattccaaaacctataacacacgtaacatgcaatttcttcttcattcttcttctcatcttgattgttca 26918459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 30112907 - 30112993
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||||||| |||||||||||||||||| || |||||||||||||||| |||||||| |||||||||| |||| ||||||    
T  30112907 cgttcataaattttgtgccattccaaaacctagaacacgcataacgtgcaatttcctcttcatttttcttcccattttgactgttca 30112993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 536 - 616
Target Start/End: Complemental strand, 51943511 - 51943432
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgat 616  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||||| |||||||||||||||||| ||||||||||||||||    
T  51943511 cgttcataaattttgttacattccaaaac-tagaacacacataacatgcaatttcttcttcatttttcttcccatcttgat 51943432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 536 - 596
Target Start/End: Original strand, 7111796 - 7111856
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttc 596  Q
    |||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||    
T  7111796 cgttcataaattttgttccattgcaaaacctataacacacataacgtgcaatttcttcttc 7111856  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 622
Target Start/End: Original strand, 43590656 - 43590696
Alignment:
Q  582 tgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||  ||||||||||| ||||||||||||||||    
T  43590656 tgcaatttctttctcattcttctttccatcttgattgttca 43590696  T

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Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 39130892 - 39130978
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39130892 cgttcataaattttgttccattccaaatcctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 39130978  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 43861550 - 43861636
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43861550 cgttcataaattttgttccattccaaaacctagaacacacataacgtgaaatttcttcttcattcttcttcccatcttgattgttca 43861636  T

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Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 50937503 - 50937417
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  50937503 cgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttctcatcttgattgttca 50937417  T

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Target: chr3; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 42878652 - 42878738
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  42878652 cgttcataaattttgttccattccaaaacctagaacacacataaagtgcaatttcttcttgattcttcttcccatcttgattgttca 42878738  T

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Target: chr3; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 48073769 - 48073683
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48073769 cgttcatatattttgttccattccaaaacctagaacacacataatgtgcaatttcttcttcattcttcttcccatcttgattgttca 48073683  T

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Target: chr3; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 42879549 - 42879463
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  42879549 cgttcataaattttgttccattccaaaacctaaaacacacataacgtgcaatttcttcttcattcttcttcttatcttgattgttca 42879463  T

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Target: chr3; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 43358575 - 43358488
Alignment:
Q  536 cgttcataaattttgttccatt-ccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  43358575 cgttcataaattttgttccatttccaaaacctagaacacacataacgtgcaatttctacttcattctttttcccatcttgattgttca 43358488  T

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Target: chr3; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 2228470 - 2228384
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  2228470 cgttcataaattttgtttcattccaaaacttagaacacacataacgtgcaatttctttttcattctttttcccatcttgattgttca 2228384  T

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Target: chr3; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 22979770 - 22979684
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||| ||||| ||||||||||||||||    
T  22979770 cgttcataaattttgttccattccaaaaactagaacacacataacgtgaaatttcttcttcattattcttgccatcttgattgttca 22979684  T

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Target: chr3; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 39131786 - 39131700
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| |||||| |||||||||||||||    
T  39131786 cgttcataaattttgttccattccaaaatctagaacacacataacatgcaatttcttcttcattattcttctcatcttgattgttca 39131700  T

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Target: chr3; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 48072883 - 48072969
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  48072883 cgttcataaattttgttcaattccaaaccctagaacacacataacgtgcaatttcttcttcattcttttttccatcttgattgttca 48072969  T

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Target: chr3; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 50936604 - 50936690
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| ||| |||||||||||||||    
T  50936604 cgttcataaattttgttccattccaaaacctagaacacacacaacgtgaaatttcttcttcattctttttctcatcttgattgttca 50936690  T

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Target: chr3; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 542 - 622
Target Start/End: Complemental strand, 42165097 - 42165017
Alignment:
Q  542 taaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42165097 taaattttatttcattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccttcttgattgttca 42165017  T

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Target: chr3; HSP #14
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 22978868 - 22978954
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||  ||||||||||| | | ||||||||||||||||||||||||||||||| |||||||||||||||    
T  22978868 cgttcataaattttgttccatttaaaaacctagaacatatataacgtgcaatttcttcttcattcttcttctcatcttgattgttca 22978954  T

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Target: chr3; HSP #15
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 36465877 - 36465962
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| |||||||||||| |||||||||||    
T  36465877 cgttcataaattttgttccattcaaaaacctagaacacacataacctgcaatttcttcttca-tcttcttcccatgttgattgttca 36465962  T

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Target: chr3; HSP #16
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 7042571 - 7042654
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||| |||||| ||||    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7042571 cgttcataaattttgttccattctaaaacccagaac---cataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 7042654  T

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Target: chr3; HSP #17
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 538 - 622
Target Start/End: Complemental strand, 43862423 - 43862339
Alignment:
Q  538 ttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||| |  |||||||||||||||| |||||||| ||||||| ||||||||||||||    
T  43862423 ttcataaattttgttccattccaaaacctagaacatgcataacgtgcaatttcctcttcatttttcttcctatcttgattgttca 43862339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 42164205 - 42164291
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||| ||||||||||||||||| |  |||||||||||||||| |||||||| |||||| |||||||||||||||    
T  42164205 cgttcataaattttgtttcattccaaaacctagaacatgcataacgtgcaatttcctcttcatttttcttctcatcttgattgttca 42164291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 536 - 622
Target Start/End: Complemental strand, 36471642 - 36471561
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||||| | ||| |     |||||||||||| ||||||||||||||||||||||||||    
T  36471642 cgttcataaattttgttccattccaaaacctagaacagacaca-----caatttcttcttaattcttcttcccatcttgattgttca 36471561  T

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Target: scaffold0014 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 69730 - 69816
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  69730 cgttcataaatttcgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattattca 69816  T

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Target: scaffold0014; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 537 - 622
Target Start/End: Complemental strand, 70742 - 70657
Alignment:
Q  537 gttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||  ||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||  ||||||||    
T  70742 gttcataaattttgttttattccaaaaccaagaacacacataacgtgtaatttcttcttcattcttcttcccatctaaattgttca 70657  T

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Target: chr1 (Bit Score: 71; Significance: 8e-32; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 536 - 622
Target Start/End: Original strand, 23260110 - 23260196
Alignment:
Q  536 cgttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| ||||    
T  23260110 cgttcataaattttgttccattccaaaacctagaacacacataacatgcaatttcttcttcattcttctttccatcttgatttttca 23260196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 539 - 622
Target Start/End: Original strand, 4639228 - 4639311
Alignment:
Q  539 tcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    ||||||||||| |||||||| ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  4639228 tcataaattttcttccattctaaaacctagaacacacataacatacaatttcttcttcattcttcttcccatcttgattgttca 4639311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 537 - 622
Target Start/End: Complemental strand, 23260869 - 23260786
Alignment:
Q  537 gttcataaattttgttccattccaaaacctagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||||||||||||||||||||||  | |||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  23260869 gttcataaattttgttccattccaaaaccta--acacacataacgtgtaatttcttcttcactcttcttcccatcttgattgttca 23260786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 622
Target Start/End: Complemental strand, 43847406 - 43847366
Alignment:
Q  582 tgcaatttcttcttcattcttcttcccatcttgattgttca 622  Q
    |||||||||||  |||||||||||||||||| |||||||||    
T  43847406 tgcaatttctttctcattcttcttcccatctcgattgttca 43847366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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