View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6535_high_2 (Length: 502)

Name: NF6535_high_2
Description: NF6535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6535_high_2
NF6535_high_2
[»] chr8 (9 HSPs)
chr8 (18-485)||(40805288-40805756)
chr8 (18-193)||(40812107-40812282)
chr8 (19-200)||(40825833-40826014)
chr8 (317-485)||(40812281-40812449)
chr8 (314-485)||(40826098-40826269)
chr8 (317-485)||(40817440-40817608)
chr8 (18-189)||(40817266-40817437)
chr8 (18-189)||(40807010-40807181)
chr8 (317-478)||(40807184-40807345)
[»] scaffold0559 (4 HSPs)
scaffold0559 (318-485)||(8888-9057)
scaffold0559 (18-180)||(7457-7619)
scaffold0559 (344-485)||(3698-3839)
scaffold0559 (318-478)||(7281-7442)
[»] scaffold0415 (2 HSPs)
scaffold0415 (317-485)||(14756-14924)
scaffold0415 (18-189)||(14927-15098)


Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 40805288 - 40805756
Alignment:
Q  18 actgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatcttttgacttgaaaccatggt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40805288 actgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatcttttgacttgaaaccatggt 40805387  T
Q  118 tgctcctcctggcttctaatattagaattgctgcaatatttgtgtccttcccaacatccaaaagctaataatctctgcaaaatacagataaaaattaatt 217  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40805388 tgctcctcctggcttctaatattagagttgctgcaatatttgtgtccttcccaacatccaaaagctagtaatctctgcaaaatacagataaaaattaatt 40805487  T
Q  218 ataagtaagttaaattcaacattaaattattagtagatgtcttggtgagagatattattgcttaactagtagtgtggcatgcat-atatggtgtagatac 316  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||  | |  |||||||||    
T  40805488 ataaataagttaaattcaacattaaattattagtagatgtcttggtgagagatattattgcttaactagtagagtggcatatatggtgtactgtagatac 40805587  T
Q  317 ctttttgatggtgcagagaacgtttccttttagattcatcagatttacttctcttccaccctttctgtcatagttttcaactcggtaaacgatgtcacca 416  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40805588 ctttttgatggtgcagagaacgtttccttttagattcatgagatttacttctcttccaccctttctgtcatagttttcaactcggtaaacgatgtcacca 40805687  T
Q  417 tttgaatcataggcagtacaaccgttggagtgaagaacaagtgatttcatccatacagtatacgtttct 485  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40805688 tttgaatcataggcagtacaaccattggagtgaagaacaagtgatttcatccatacagtatacgtttct 40805756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 40812107 - 40812282
Alignment:
Q  18 actgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatcttttgacttgaaaccatggt 117  Q
    ||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||| |  | || ||||||||||||||| |||||||||||||||    
T  40812107 actgattctttctatacacaaattttggctccccactttaatctggcaagctattttcccagagaaaaccttatgacatcttttaacttgaaaccatggt 40812206  T
Q  118 tgctcctcctggcttctaatattagaattgctgcaatatttgtgtccttcccaacatccaaaagctaataatctct 193  Q
    || ||||  |||||||||| | |||||||| ||||||||||||| |||||||||||||||||| ||| ||||||||    
T  40812207 tgttccttttggcttctaaaagtagaattgttgcaatatttgtggccttcccaacatccaaaaactagtaatctct 40812282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 40825833 - 40826014
Alignment:
Q  19 ctgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatcttttgacttgaaaccatggtt 118  Q
    ||||||||||||||||| | ||||||| | |||||||||||||||||||||||||||||||  |||| ||||||||||||||| ||||  ||||||||||    
T  40825833 ctgattctttctatgcacatattttgggatcccactttaatctggcaagctattttccctgatataaccttatgacatcttttaactttgaaccatggtt 40825932  T
Q  119 gctcctcctggcttctaatattagaattgctgcaatatttgtgtccttcccaacatccaaaagctaataatctctgcaaaat 200  Q
    ||||||| || ||||| | | | |||||| ||||||||||||| |||||||| ||||||||||||| |||||||||||||||    
T  40825933 gctcctcttgccttcttaaacttgaattgttgcaatatttgtggccttcccagcatccaaaagctagtaatctctgcaaaat 40826014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 317 - 485
Target Start/End: Original strand, 40812281 - 40812449
Alignment:
Q  317 ctttttgatggtgcagagaacgtttccttttagattcatcagatttacttctcttccaccctttctgtcatagttttcaactcggtaaacgatgtcacca 416  Q
    ||||||||||||||||||||| || |||| ||||| ||| ||||| |||||||||||||| ||  |||||||||| |||||||| |||||||||| |||     
T  40812281 ctttttgatggtgcagagaacattgccttgtagatccatgagattcacttctcttccacctttcttgtcatagttatcaactcgataaacgatgttaccc 40812380  T
Q  417 tttgaatcataggcagtacaaccgttggagtgaagaacaagtgatttcatccatacagtatacgtttct 485  Q
    |||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||    
T  40812381 tttgaatcatagacagtgcaaccattggagtggagaacaagtgatttcatccatacagtatatgtttct 40812449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 314 - 485
Target Start/End: Original strand, 40826098 - 40826269
Alignment:
Q  314 tacctttttgatggtgcagagaacgtttccttttagattcatcagatttacttctcttccaccctttctgtcatagttttcaactcggtaaacgatgtca 413  Q
    ||||||||| || || |||||||| ||||||||||||||||| ||| | ||||| |||||||||||||||||||||||||||||||| |||||||||  |    
T  40826098 taccttttttattgtacagagaacatttccttttagattcatgagagtaacttcccttccaccctttctgtcatagttttcaactcgataaacgatgcta 40826197  T
Q  414 ccatttgaatcataggcagtacaaccgttggagtgaagaacaagtgatttcatccatacagtatacgtttct 485  Q
    ||||||||||||||  |||| ||||| || ||||| |||||||||||||||||||| |||||||| ||||||    
T  40826198 ccatttgaatcataaacagtgcaaccattagagtgtagaacaagtgatttcatccacacagtatatgtttct 40826269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 317 - 485
Target Start/End: Original strand, 40817440 - 40817608
Alignment:
Q  317 ctttttgatggtgcagagaacgtttccttttagattcatcagatttacttctcttccaccctttctgtcatagttttcaactcggtaaacgatgtcacca 416  Q
    ||||||||||||||| ||||  || |||| ||||| ||| ||||| |||||||||| ||| ||| |||||||||| |||||||| |||||||||| |||     
T  40817440 ctttttgatggtgcaaagaagattcccttgtagatccattagattcacttctcttctaccttttttgtcatagttatcaactcgataaacgatgttaccg 40817539  T
Q  417 tttgaatcataggcagtacaaccgttggagtgaagaacaagtgatttcatccatacagtatacgtttct 485  Q
    |||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  40817540 tttgaatcatagacagtgcaaccattggagtgaagaacaagtgatttcatccatacagtatatgtttct 40817608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 40817266 - 40817437
Alignment:
Q  18 actgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatcttttgacttgaaaccatggt 117  Q
    |||||||||||||||||| ||||||||| |||| ||||||||||| ||||||| ||| ||||| |||||||||  ||||||||| ||||| |||||||||    
T  40817266 actgattctttctatgcacaaattttgggaccctactttaatctgacaagctacttttcctgtgataatcttagtacatcttttaacttggaaccatggt 40817365  T
Q  118 tgctcctcctggcttctaatattagaattgctgcaatatttgtgtccttcccaacatccaaaagctaataat 189  Q
    || ||||| ||||||| || |||||||||| | ||||||||||  |||||||||||||||||||||| ||||    
T  40817366 tgttcctcttggcttccaaaattagaattgttacaatatttgtagccttcccaacatccaaaagctagtaat 40817437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 40807010 - 40807181
Alignment:
Q  18 actgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatcttttgacttgaaaccatggt 117  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |  | || ||||||||||||||| ||||  |||||||||    
T  40807010 actgattctttctatacacaaattttggcaccccactttaatctggcaagctattttcccagagaaaaccttatgacatcttttaactttgaaccatggt 40807109  T
Q  118 tgctcctcctggcttctaatattagaattgctgcaatatttgtgtccttcccaacatccaaaagctaataat 189  Q
    |||||||| |||||| | | | | |||||  ||||||||||||  |||||||||||||||||||||| ||||    
T  40807110 tgctcctcttggctttttaaacttgaattattgcaatatttgtagccttcccaacatccaaaagctagtaat 40807181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 317 - 478
Target Start/End: Original strand, 40807184 - 40807345
Alignment:
Q  317 ctttttgatggtgcagagaacgtttccttttagattcatcagatttacttctcttccaccctttctgtcatagttttcaactcggtaaacgatgtcacca 416  Q
    ||||||||||||||||||||  || |||| | ||| ||| ||||| |||||||||  ||| ||| |||| ||||| ||||| || |||||||||| |||     
T  40807184 ctttttgatggtgcagagaagattgccttgttgatccatgagattgacttctcttttaccttttttgtcgtagttatcaacacgataaacgatgttaccc 40807283  T
Q  417 tttgaatcataggcagtacaaccgttggagtgaagaacaagtgatttcatccatacagtata 478  Q
    |||||||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  40807284 tttgaatcatagacagtgcaaccattggagtgtagaacaagtgatttcatccatacagtata 40807345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0559 (Bit Score: 146; Significance: 1e-76; HSPs: 4)
Name: scaffold0559
Description:

Target: scaffold0559; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 318 - 485
Target Start/End: Complemental strand, 9057 - 8888
Alignment:
Q  318 tttttgatggtgcagagaacgtttcctttt-agattcatcagatttacttctcttccaccctttctgtcatagtttt-caactcggtaaacgatgtcacc 415  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9057 tttttgatggtgcagagaacgtttcctttttagattcatgagatttacttctcttccaccctttctgtcatagtttttcaactcggtaaacgatgtcacc 8958  T
Q  416 atttgaatcataggcagtacaaccgttggagtgaagaacaagtgatttcatccatacagtatacgtttct 485  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8957 atttgaatcataggcagtacaaccattggagtgaagaacaagtgatttcatccatacagtatacgtttct 8888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0559; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 7619 - 7457
Alignment:
Q  18 actgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatcttttgacttgaaaccatggt 117  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |  | || ||||||||||||||| ||||  |||||||||    
T  7619 actgattctttctatacacaaattttggcaccccactttaatctggcaagctattttcccagagaaaaccttatgacatcttttaactttgaaccatggt 7520  T
Q  118 tgctcctcctggcttctaatattagaattgctgcaatatttgtgtccttcccaacatccaaaa 180  Q
    |||||||| |||||| | | | | |||||  ||||||||||||  ||||||||||||||||||    
T  7519 tgctcctcttggctttttaaacttgaattattgcaatatttgtagccttcccaacatccaaaa 7457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0559; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 344 - 485
Target Start/End: Original strand, 3698 - 3839
Alignment:
Q  344 ttttagattcatcagatttacttctcttccaccctttctgtcatagttttcaactcggtaaacgatgtcaccatttgaatcataggcagtacaaccgttg 443  Q
    |||||||||||| ||| | ||||| |||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||  |||| ||||| ||     
T  3698 ttttagattcatgagagtaacttcccttccaccctttctgtcatagttttcaactcgataaacgatgctaccatttgaatcataaacagtgcaaccatta 3797  T
Q  444 gagtgaagaacaagtgatttcatccatacagtatacgtttct 485  Q
    ||||| |||||||||||||||||||| |||||||| ||||||    
T  3798 gagtgtagaacaagtgatttcatccacacagtatatgtttct 3839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0559; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 318 - 478
Target Start/End: Complemental strand, 7442 - 7281
Alignment:
Q  318 tttttgatggtgcagagaacgtttccttttagattcatcagatttacttctcttccaccctttct-gtcatagttttcaactcggtaaacgatgtcacca 416  Q
    |||||||||||||||||||  || |||| | ||| ||| ||||| |||||||||  ||| ||| | ||| ||||| ||||| || |||||||||| |||     
T  7442 tttttgatggtgcagagaagattgccttgttgatccatgagattgacttctcttttacctttttttgtcgtagttatcaacacgataaacgatgttaccc 7343  T
Q  417 tttgaatcataggcagtacaaccgttggagtgaagaacaagtgatttcatccatacagtata 478  Q
    |||||||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  7342 tttgaatcatagacagtgcaaccattggagtgtagaacaagtgatttcatccatacagtata 7281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0415 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: scaffold0415
Description:

Target: scaffold0415; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 317 - 485
Target Start/End: Complemental strand, 14924 - 14756
Alignment:
Q  317 ctttttgatggtgcagagaacgtttccttttagattcatcagatttacttctcttccaccctttctgtcatagttttcaactcggtaaacgatgtcacca 416  Q
    ||||||||||||||| ||||  || |||| ||||| ||| ||||| |||||||||| ||| ||| |||||||||| |||||||| |||||||||| |||     
T  14924 ctttttgatggtgcaaagaagattcccttgtagatccattagattcacttctcttctaccttttttgtcatagttatcaactcgataaacgatgttaccg 14825  T
Q  417 tttgaatcataggcagtacaaccgttggagtgaagaacaagtgatttcatccatacagtatacgtttct 485  Q
    |||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  14824 tttgaatcatagacagtgcaaccattggagtgaagaacaagtgatttcatccatacagtatatgtttct 14756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0415; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 15098 - 14927
Alignment:
Q  18 actgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatcttttgacttgaaaccatggt 117  Q
    |||||||||||||||||| ||||||||| |||| ||||||||||| ||||||| ||| ||||| |||||||||  ||||||||| ||||| |||||||||    
T  15098 actgattctttctatgcacaaattttgggaccctactttaatctgacaagctacttttcctgtgataatcttagtacatcttttaacttggaaccatggt 14999  T
Q  118 tgctcctcctggcttctaatattagaattgctgcaatatttgtgtccttcccaacatccaaaagctaataat 189  Q
    || ||||| ||||||| || |||||||||| | ||||||||||  |||||||||||||||||||||| ||||    
T  14998 tgttcctcttggcttccaaaattagaattgttacaatatttgtagccttcccaacatccaaaagctagtaat 14927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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