View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6535_high_4 (Length: 332)
Name: NF6535_high_4
Description: NF6535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6535_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 51960122 - 51960431
Alignment:
| Q |
17 |
acaaacaagaaggaaatacaatgaaggagactagaactaggactacattatcttaaaactattttcgttttcatattcattcttggtgacgattgca--- |
113 |
Q |
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| T |
51960122 |
acaaataagaaggaaatacaatgaaggagactatgactaggactacattatcttaaaactattttcgttttcatattcattcttggtgacggttgcattc |
51960221 |
T |
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| Q |
114 |
-ctaatactttacttataacattgatatattctaagaaactaaccaatgatttgtcatactggaactatctaaatccttctagaaggaggtgaatcatgg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| ||||| |
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| T |
51960222 |
actaatactttacttataacattgatatattctaagaaactaatcaatgatttgtcatactgaaactatctagatccttctagaaggaggtgatgcatgg |
51960321 |
T |
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| Q |
213 |
tctaataggattcatagtctctaagtcacttgagccaaaatatatttttcttgggctcatgggtcttgacgatttacttactacattagactcaattctc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51960322 |
tctaataggattcatagtctctaagtcacttgagccgaaatatatttttcttgggctcatgggtcttgacgatttacttactacattagactcaattctc |
51960421 |
T |
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| Q |
313 |
tttccctttg |
322 |
Q |
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|||||||||| |
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| T |
51960422 |
tttccctttg |
51960431 |
T |
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