View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6535_high_5 (Length: 275)
Name: NF6535_high_5
Description: NF6535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6535_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 1552832 - 1553077
Alignment:
| Q |
13 |
cacagacacatcttacttcattaaattggtttttgtttgcatttgcttgtgtttatctacctaaattaacatcaacaatagcaaaagatagaaagagcac |
112 |
Q |
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| T |
1552832 |
cacagacacatcttacttcattaaattggtttttgtttgcatttgcttgtgtttatctacctaaattaacatcaacaatagcaaaagatagaaagagcac |
1552931 |
T |
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| Q |
113 |
agtggagtggaacatagtgtccacgtggttggaagccaaatcagctgaggatggaaatccatttcctattggtccaaaatctatccacgatataccttaa |
212 |
Q |
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| T |
1552932 |
agtggagtggaacatagtgtccacgtggttggaagccaaatcagctgaggatggaaatccatttcctattggtccaaaatctatccacgatataccttaa |
1553031 |
T |
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| Q |
213 |
gatttcttgtttagatttcattgtcctacttggccttctatgaaaa |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1553032 |
gatttcttgtttagatttcattgtcctacttggccttctatgaaaa |
1553077 |
T |
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